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The map label for this gene is yeaM [H]

Identifier: 50084243

GI number: 50084243

Start: 1031847

End: 1032620

Strand: Reverse

Name: yeaM [H]

Synonym: ACIAD1041

Alternate gene names: 50084243

Gene position: 1032620-1031847 (Counterclockwise)

Preceding gene: 50084246

Following gene: 50084239

Centisome position: 28.69

GC content: 42.12

Gene sequence:

>774_bases
ATGCCAATTTCAACAAAACAGTCTGAACTCATCATAGGTCTATCTTCAGAACATCGCTATAAAGAAATTACTTATGCGCA
TGCTCACTTGAGAGCACAATTACTTTATGCCTCTCAAGGCAGCATTCAGGTCTTTACACCAGATCAGGTCTGGATTTTAC
CTCCCATGTGCGCACTCTGGATTCCACCGCGGGTCGAACACAGCGTTATTTCACTCAGTCAGGTTAAACTCAATACTGCG
CTAGTCGAGGAAAATGCGGCAAAGTCGATGGGGGAACATTGCTTCTTGATTCGGGTGAGCAATTTGCTTCATGAATTATT
AATTCGTTTTAATGAACTGGATGAGCTTAAAGACCATCCAGATGATCGTTCGAGACAACTTTCCCATGCTTTACAAATCA
TTGTATTTGATGAGATTAAACGAGCTAACTCACTCCCTGTACAGATTCCATGGCCTAAGGATCATCGCCTGATTAAAATA
TGTGAAACGCTGTTGCGATCACCTCATCATGTATATGACCTGAACACATGGGCAGATGAAATCAATACCAGCTCGCGTAC
CCTCATGCGCATGTTTCAAAGAGAAACTGGGCTTTCTTATCGTGCATGGCTTCAGCAGATGCATATTGCGCTCGCTTTAA
AGCAACTCTCTGATGATCAAACCATTGGTCAGATTTCTGAATCTTTGGGTTACACCAGTGCCAGTGCATTTAGTGCGATG
TTTAAACGTCATATGGGCATTACTCCTCAGCAGTTTAAGCAATATAAAAAATAA

Upstream 100 bases:

>100_bases
GACGTCATCCTCAAACTCCAATATTTCTAATGAAACATCATTGTAAAATGTCTATTATGCAGTTATCTTCCAATAATCAT
TGTGAAAGTGACACTTTATC

Downstream 100 bases:

>100_bases
TCTGTACCTGACTATACGATCAACATAGGTCAGACTATTTTTCTAACAGTTCATCCATATTCTGATACACATGTAGTACT
CGATCTTTGTGAGTACGCGC

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 257; Mature: 256

Protein sequence:

>257_residues
MPISTKQSELIIGLSSEHRYKEITYAHAHLRAQLLYASQGSIQVFTPDQVWILPPMCALWIPPRVEHSVISLSQVKLNTA
LVEENAAKSMGEHCFLIRVSNLLHELLIRFNELDELKDHPDDRSRQLSHALQIIVFDEIKRANSLPVQIPWPKDHRLIKI
CETLLRSPHHVYDLNTWADEINTSSRTLMRMFQRETGLSYRAWLQQMHIALALKQLSDDQTIGQISESLGYTSASAFSAM
FKRHMGITPQQFKQYKK

Sequences:

>Translated_257_residues
MPISTKQSELIIGLSSEHRYKEITYAHAHLRAQLLYASQGSIQVFTPDQVWILPPMCALWIPPRVEHSVISLSQVKLNTA
LVEENAAKSMGEHCFLIRVSNLLHELLIRFNELDELKDHPDDRSRQLSHALQIIVFDEIKRANSLPVQIPWPKDHRLIKI
CETLLRSPHHVYDLNTWADEINTSSRTLMRMFQRETGLSYRAWLQQMHIALALKQLSDDQTIGQISESLGYTSASAFSAM
FKRHMGITPQQFKQYKK
>Mature_256_residues
PISTKQSELIIGLSSEHRYKEITYAHAHLRAQLLYASQGSIQVFTPDQVWILPPMCALWIPPRVEHSVISLSQVKLNTAL
VEENAAKSMGEHCFLIRVSNLLHELLIRFNELDELKDHPDDRSRQLSHALQIIVFDEIKRANSLPVQIPWPKDHRLIKIC
ETLLRSPHHVYDLNTWADEINTSSRTLMRMFQRETGLSYRAWLQQMHIALALKQLSDDQTIGQISESLGYTSASAFSAMF
KRHMGITPQQFKQYKK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788091, Length=229, Percent_Identity=30.5676855895196, Blast_Score=117, Evalue=1e-27,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011051
- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR018060
- InterPro:   IPR014710 [H]

Pfam domain/function: PF02311 AraC_binding [H]

EC number: NA

Molecular weight: Translated: 29680; Mature: 29548

Theoretical pI: Translated: 8.48; Mature: 8.48

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPISTKQSELIIGLSSEHRYKEITYAHAHLRAQLLYASQGSIQVFTPDQVWILPPMCALW
CCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHEEECCCCEEEECCCCEEEECCHHHHC
IPPRVEHSVISLSQVKLNTALVEENAAKSMGEHCFLIRVSNLLHELLIRFNELDELKDHP
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC
DDRSRQLSHALQIIVFDEIKRANSLPVQIPWPKDHRLIKICETLLRSPHHVYDLNTWADE
CHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCHHHHHHHHHHCCCCEEEECHHHHHH
INTSSRTLMRMFQRETGLSYRAWLQQMHIALALKQLSDDQTIGQISESLGYTSASAFSAM
HCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHH
FKRHMGITPQQFKQYKK
HHHHCCCCHHHHHHHCC
>Mature Secondary Structure 
PISTKQSELIIGLSSEHRYKEITYAHAHLRAQLLYASQGSIQVFTPDQVWILPPMCALW
CCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHEEECCCCEEEECCCCEEEECCHHHHC
IPPRVEHSVISLSQVKLNTALVEENAAKSMGEHCFLIRVSNLLHELLIRFNELDELKDHP
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC
DDRSRQLSHALQIIVFDEIKRANSLPVQIPWPKDHRLIKICETLLRSPHHVYDLNTWADE
CHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCHHHHHHHHHHCCCCEEEECHHHHHH
INTSSRTLMRMFQRETGLSYRAWLQQMHIALALKQLSDDQTIGQISESLGYTSASAFSAM
HCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHH
FKRHMGITPQQFKQYKK
HHHHCCCCHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]