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The map label for this gene is ydhC [H]

Identifier: 50084173

GI number: 50084173

Start: 955566

End: 956267

Strand: Direct

Name: ydhC [H]

Synonym: ACIAD0968

Alternate gene names: 50084173

Gene position: 955566-956267 (Clockwise)

Preceding gene: 50084172

Following gene: 50084177

Centisome position: 26.55

GC content: 38.6

Gene sequence:

>702_bases
TTGATTATACTTATGTCTAAGCCATTATCTGAAAAAAAGACCTCTAATAATATTTCGGATCTGATCTATGGACTATTAAA
AGAAGATATCTTTAACTTTGTCTTAAAACCTGGTCAGCGCTTTACCGAAACAGATTTATCGGAACGTTATGAAGCGAGTC
GAACTCCGATTAGACAGGCGTTGTATCGCCTTGAACAAGAGGGATTTGTGCATGTACATTTTCGAAGTGGCTGGGAAATT
CGCCCGCTTGAATTTAAGTATTATCAGGAATTATTTGATTTGCGCATGATTCTGGAAAAAGAGGCGGTCAAGCGCCTGTG
TGAGCTTGAGCATCCCGAACAATTACCCGCATTAATCGAATTAAAAAAAATGTGGTTGATTGCGCCTGTAGATTATTTGA
CGGATACCAAAACGCTTGTTTTACAAAGTGAAGACTTTCATTGTGCTTTAGTACGTGCAGCAGGAAATCAGCAAATTGCC
AAAATTCACCAAGAAGCCAGTGAGAAAATCCGAATTGTACTCAGTTTAGGGGCCATGAAAGAGTTTGATATTGCACATGC
CTATCAGGATCATGGTGCAATTTTACAATGCATTTTAAATAAAGACGCCGAGCAAGCGATTCATCTTGCAGAGCATCATG
TACTTGAAAGCATCCATGAAGTCAAAAATATTACTTTACAGATGATCAGCGCGATTCATTAA

Upstream 100 bases:

>100_bases
GAGCCCATTATGATTATGTTGGGTTTACATCTATTTGACTGCGATGAAAGGTTTGTAAATCTTAAAAACGCACTATAATG
CAGGCTTATATTTATCGTAT

Downstream 100 bases:

>100_bases
ATTAGAGTTTTCGCGGCATTACAATTTTTTGTTCGCCTATAAAAGCCTGCTGAAATGGCAAGTCATAAATACTTGCCAAA
AACTCAGCATCTGTAGCCAA

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 233; Mature: 233

Protein sequence:

>233_residues
MIILMSKPLSEKKTSNNISDLIYGLLKEDIFNFVLKPGQRFTETDLSERYEASRTPIRQALYRLEQEGFVHVHFRSGWEI
RPLEFKYYQELFDLRMILEKEAVKRLCELEHPEQLPALIELKKMWLIAPVDYLTDTKTLVLQSEDFHCALVRAAGNQQIA
KIHQEASEKIRIVLSLGAMKEFDIAHAYQDHGAILQCILNKDAEQAIHLAEHHVLESIHEVKNITLQMISAIH

Sequences:

>Translated_233_residues
MIILMSKPLSEKKTSNNISDLIYGLLKEDIFNFVLKPGQRFTETDLSERYEASRTPIRQALYRLEQEGFVHVHFRSGWEI
RPLEFKYYQELFDLRMILEKEAVKRLCELEHPEQLPALIELKKMWLIAPVDYLTDTKTLVLQSEDFHCALVRAAGNQQIA
KIHQEASEKIRIVLSLGAMKEFDIAHAYQDHGAILQCILNKDAEQAIHLAEHHVLESIHEVKNITLQMISAIH
>Mature_233_residues
MIILMSKPLSEKKTSNNISDLIYGLLKEDIFNFVLKPGQRFTETDLSERYEASRTPIRQALYRLEQEGFVHVHFRSGWEI
RPLEFKYYQELFDLRMILEKEAVKRLCELEHPEQLPALIELKKMWLIAPVDYLTDTKTLVLQSEDFHCALVRAAGNQQIA
KIHQEASEKIRIVLSLGAMKEFDIAHAYQDHGAILQCILNKDAEQAIHLAEHHVLESIHEVKNITLQMISAIH

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000485
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 27057; Mature: 27057

Theoretical pI: Translated: 6.37; Mature: 6.37

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIILMSKPLSEKKTSNNISDLIYGLLKEDIFNFVLKPGQRFTETDLSERYEASRTPIRQA
CEEEECCCCCHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCHHHHH
LYRLEQEGFVHVHFRSGWEIRPLEFKYYQELFDLRMILEKEAVKRLCELEHPEQLPALIE
HHHHHHCCEEEEEECCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
LKKMWLIAPVDYLTDTKTLVLQSEDFHCALVRAAGNQQIAKIHQEASEKIRIVLSLGAMK
HHHHHHHCCHHHHCCCEEEEEECCCCEEEEEEECCCHHHHHHHHHHHHHEEEEEECCCCH
EFDIAHAYQDHGAILQCILNKDAEQAIHLAEHHVLESIHEVKNITLQMISAIH
HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MIILMSKPLSEKKTSNNISDLIYGLLKEDIFNFVLKPGQRFTETDLSERYEASRTPIRQA
CEEEECCCCCHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCHHHHH
LYRLEQEGFVHVHFRSGWEIRPLEFKYYQELFDLRMILEKEAVKRLCELEHPEQLPALIE
HHHHHHCCEEEEEECCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
LKKMWLIAPVDYLTDTKTLVLQSEDFHCALVRAAGNQQIAKIHQEASEKIRIVLSLGAMK
HHHHHHHCCHHHHCCCEEEEEECCCCEEEEEEECCCHHHHHHHHHHHHHEEEEEECCCCH
EFDIAHAYQDHGAILQCILNKDAEQAIHLAEHHVLESIHEVKNITLQMISAIH
HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]