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The map label for this gene is rpoE [C]

Identifier: 50084142

GI number: 50084142

Start: 918173

End: 918793

Strand: Direct

Name: rpoE [C]

Synonym: ACIAD0935

Alternate gene names: 50084142

Gene position: 918173-918793 (Clockwise)

Preceding gene: 50084141

Following gene: 50084143

Centisome position: 25.51

GC content: 38.16

Gene sequence:

>621_bases
ATGAGTTCTGCTTCAGCGCATCACAAAAAGGATCTTTTAGATCAGGTGAATAATCCTGTCTTTTTACAAGATCTAAGACA
ACAAATGATTAAATTTGCTGTTTTACAGCTTGCTTCATTACCGCATGCAGAGGACGTGGTGCAGGACGCTTTGGCAAGTG
CATTTCAACACTTGGATTCTTTTACAGGACGCGCTGCTTTCAAAACTTGGGTTTTTGCAATTTTAAAAAATAAGATCATT
GATTTGATCAGACAAAAATCACGTTTGGTGAGTATGAGTGAACTCTTTAAAGATGAGGAAAGTGAACTCAGCATTGATGC
CTTATTTGATGCTTCAGGTCATTGGCATAAATATGAGGCTCCCCAAGCTTGGTTAAGTCCAGAAGAAATGATGGAACAGC
AAGATTTCTGGATTATTTTTGATGCTTGTCTTAATCACTTACCTGCCAAATATGCACAGGTATTTATGCTGCGTGAAGTG
ATTGAACTAAATTCCAGTGAAATTTGTGAGAAACTCGAACTGACAGTTTCACATTTTAATGTACTGATGTATCGTAGCCG
AACCCGACTGCGAGAATGCCTAGAAAATAAATGGTTATTGCAGGAGGATTGCTCATGTTAA

Upstream 100 bases:

>100_bases
TATCTGAGCAAGAAATTAAAATACAAATCTATGAGTTAAAAGCATTATTGACTCGATTAAGATTAATTCATGTTCCCCAT
AATTATGGTGAGATCCAAGG

Downstream 100 bases:

>100_bases
CCTGCCGTCAGGCCACTCAACTCTTATCTGAAAAGCAAGATAGAGCACTTTTATTGCGAGAGCAGAGCAATTTACAGCTA
CATTTATTGACCTGCCGTTC

Product: RNA polymerase sigma factor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 206; Mature: 205

Protein sequence:

>206_residues
MSSASAHHKKDLLDQVNNPVFLQDLRQQMIKFAVLQLASLPHAEDVVQDALASAFQHLDSFTGRAAFKTWVFAILKNKII
DLIRQKSRLVSMSELFKDEESELSIDALFDASGHWHKYEAPQAWLSPEEMMEQQDFWIIFDACLNHLPAKYAQVFMLREV
IELNSSEICEKLELTVSHFNVLMYRSRTRLRECLENKWLLQEDCSC

Sequences:

>Translated_206_residues
MSSASAHHKKDLLDQVNNPVFLQDLRQQMIKFAVLQLASLPHAEDVVQDALASAFQHLDSFTGRAAFKTWVFAILKNKII
DLIRQKSRLVSMSELFKDEESELSIDALFDASGHWHKYEAPQAWLSPEEMMEQQDFWIIFDACLNHLPAKYAQVFMLREV
IELNSSEICEKLELTVSHFNVLMYRSRTRLRECLENKWLLQEDCSC
>Mature_205_residues
SSASAHHKKDLLDQVNNPVFLQDLRQQMIKFAVLQLASLPHAEDVVQDALASAFQHLDSFTGRAAFKTWVFAILKNKIID
LIRQKSRLVSMSELFKDEESELSIDALFDASGHWHKYEAPQAWLSPEEMMEQQDFWIIFDACLNHLPAKYAQVFMLREVI
ELNSSEICEKLELTVSHFNVLMYRSRTRLRECLENKWLLQEDCSC

Specific function: Sigma Factors Are Initiation Factors That Promote The Attachment Of RNA Polymerase To Specific Initiation Sites And Are Then Released. This Sigma Factor Is Involved In Heat Shock And Oxidative Stress Response; It Is Believed To Control Protein Processing

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014289
- InterPro:   IPR014284
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 23964; Mature: 23833

Theoretical pI: Translated: 5.31; Mature: 5.31

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSASAHHKKDLLDQVNNPVFLQDLRQQMIKFAVLQLASLPHAEDVVQDALASAFQHLDS
CCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
FTGRAAFKTWVFAILKNKIIDLIRQKSRLVSMSELFKDEESELSIDALFDASGHWHKYEA
HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCCCCCCCC
PQAWLSPEEMMEQQDFWIIFDACLNHLPAKYAQVFMLREVIELNSSEICEKLELTVSHFN
CHHCCCHHHHHHHCCCEEHHHHHHHHCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
VLMYRSRTRLRECLENKWLLQEDCSC
HHHHHHHHHHHHHHHHCCCCHHCCCC
>Mature Secondary Structure 
SSASAHHKKDLLDQVNNPVFLQDLRQQMIKFAVLQLASLPHAEDVVQDALASAFQHLDS
CCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
FTGRAAFKTWVFAILKNKIIDLIRQKSRLVSMSELFKDEESELSIDALFDASGHWHKYEA
HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCCCCCCCC
PQAWLSPEEMMEQQDFWIIFDACLNHLPAKYAQVFMLREVIELNSSEICEKLELTVSHFN
CHHCCCHHHHHHHCCCEEHHHHHHHHCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
VLMYRSRTRLRECLENKWLLQEDCSC
HHHHHHHHHHHHHHHHCCCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]