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The map label for this gene is smpA [H]

Identifier: 50084117

GI number: 50084117

Start: 891218

End: 891616

Strand: Reverse

Name: smpA [H]

Synonym: ACIAD0909

Alternate gene names: 50084117

Gene position: 891616-891218 (Counterclockwise)

Preceding gene: 50084119

Following gene: 50084107

Centisome position: 24.78

GC content: 41.1

Gene sequence:

>399_bases
ATGCAAAAACTTATGTTGGCGTTATTCGTCACTTCACTGCTTGCTGGTTGTTCGACGCTTGGAGTTTATAAGGTTGATAT
TCCTCAAGGAACCCCTTTAACCAAAGCTCAAGCATCGAAAGTTCAGGTCGGCATGAGTTACCAACAAGTTCGTTTCTTAC
TAGGTAGCCCAACGATTACTGATCCGCTAAATCCACTACGTTGGGATTACATCTATAATTACATCCCAGGAACTTATGCG
AAAAAAGCAAAAATCCCAGCAGCTCATGGTCAACATTTGAAAATCTATTTCAACGAGTCTGGTATTGTGAAAAGTATAGA
AGGAATAGATACCCTTCCAGATTCTCAACCTGGCTTACCAGGCTCAAAAGAAGCGATTTTAACTGCGCCACCACTATAA

Upstream 100 bases:

>100_bases
TCTCAACAAATCTCAAGTTGGAATAGGCAATCGTGTTTAGATGCAGTATGATCTATCCTTGGATCAAATGCATCATAATT
TATCGGGATAGTGTAGCAAA

Downstream 100 bases:

>100_bases
AGACTTATGCAAAAAAATAAACCCCTCAGCAGAGGGGTTTTTCTTATTAAGTGCATCACTTAAAGCGATTGCCTTTCTGA
AACCGACCTACTGGATTTTT

Product: outer membrane lipoprotein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 132; Mature: 132

Protein sequence:

>132_residues
MQKLMLALFVTSLLAGCSTLGVYKVDIPQGTPLTKAQASKVQVGMSYQQVRFLLGSPTITDPLNPLRWDYIYNYIPGTYA
KKAKIPAAHGQHLKIYFNESGIVKSIEGIDTLPDSQPGLPGSKEAILTAPPL

Sequences:

>Translated_132_residues
MQKLMLALFVTSLLAGCSTLGVYKVDIPQGTPLTKAQASKVQVGMSYQQVRFLLGSPTITDPLNPLRWDYIYNYIPGTYA
KKAKIPAAHGQHLKIYFNESGIVKSIEGIDTLPDSQPGLPGSKEAILTAPPL
>Mature_132_residues
MQKLMLALFVTSLLAGCSTLGVYKVDIPQGTPLTKAQASKVQVGMSYQQVRFLLGSPTITDPLNPLRWDYIYNYIPGTYA
KKAKIPAAHGQHLKIYFNESGIVKSIEGIDTLPDSQPGLPGSKEAILTAPPL

Specific function: Unknown

COG id: COG2913

COG function: function code J; Small protein A (tmRNA-binding)

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the smpA/omlA family [H]

Homologues:

Organism=Escherichia coli, GI87082138, Length=112, Percent_Identity=38.3928571428571, Blast_Score=73, Evalue=8e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007450 [H]

Pfam domain/function: PF04355 SmpA_OmlA [H]

EC number: NA

Molecular weight: Translated: 14317; Mature: 14317

Theoretical pI: Translated: 9.57; Mature: 9.57

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQKLMLALFVTSLLAGCSTLGVYKVDIPQGTPLTKAQASKVQVGMSYQQVRFLLGSPTIT
CHHHHHHHHHHHHHHCHHHCCEEEEECCCCCCCCCCCCCEEEECCCHHHHHHHHCCCCCC
DPLNPLRWDYIYNYIPGTYAKKAKIPAAHGQHLKIYFNESGIVKSIEGIDTLPDSQPGLP
CCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEECCCCCCCCCCCCCCC
GSKEAILTAPPL
CCCCEEEECCCC
>Mature Secondary Structure
MQKLMLALFVTSLLAGCSTLGVYKVDIPQGTPLTKAQASKVQVGMSYQQVRFLLGSPTIT
CHHHHHHHHHHHHHHCHHHCCEEEEECCCCCCCCCCCCCEEEECCCHHHHHHHHCCCCCC
DPLNPLRWDYIYNYIPGTYAKKAKIPAAHGQHLKIYFNESGIVKSIEGIDTLPDSQPGLP
CCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEECCCCCCCCCCCCCCC
GSKEAILTAPPL
CCCCEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]