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The map label for this gene is yiaD [H]

Identifier: 50084108

GI number: 50084108

Start: 881975

End: 882628

Strand: Direct

Name: yiaD [H]

Synonym: ACIAD0898

Alternate gene names: 50084108

Gene position: 881975-882628 (Clockwise)

Preceding gene: 50084101

Following gene: 50084109

Centisome position: 24.51

GC content: 43.43

Gene sequence:

>654_bases
ATGCGTGCACTAGTCATTACAACAGTAGTCGGGGCGGCGGTAGCACTTGCAGGTTGCCAAACAACAGGTAACAACTTGGG
TGGCGTAGAGTATGATAAAGCCGCTCTAGGTACACTTATTGGTGCAGCAGCGGGTTATGGTATCTCTAAGTCTAGCGCAA
ACTCTAGCCGTCAAAATAACCGTGCCGCAGCAATTGGTGCGATTCTTGGTGGTGCAAGTGGTTTGTATCTTGACCAGAAA
GAGAAAAAATTACGTCAACAAATGGCAGGTACTGGTGTAGAAGTCAACCGTAACCCAGATGGTTCTGTTGGTTTGGTGAT
GCCAGGTAACATTACGTTTGATACCAACAAATCGAATATCAAACCAAACTTCTATTCTACTTTAAACAAGGTTGCACAAA
CTTTGGCTGAAGATAATAAGAGCGCGATTTTGGTTACAGGTTATACCGATAATACTGGTAACGATTCAATTAATATTCCA
CTTTCTCAAGCTCGTGCGCAATCAGTTGCAAACTACTTGAGTGGACAGGGTGTTTCTTCTAGTCGTATCAATGCCCAAGG
TTACGGTTCGTCAAATCCAATTGCTTCAAATGCAACAGCACAGGGTCGTGAACAAAACCGTCGTGTTGAGATTAGCATTT
ACGAACGTCAATAA

Upstream 100 bases:

>100_bases
CTAAAATCGATATTCTTAACAAAAAATCAATGGTCTAAGTTATTTTTTTCTTTCATCATTTTCATCATAGACAACAAAGA
CACAAACGAGGAGGCATGCA

Downstream 100 bases:

>100_bases
GCGTCGCGTGAATTTACAAAAACCACCTTCGGGTGGTTTTTTTATGAGTAAAATCCCTTGTTTTCGATTAGTCATCTTGC
TGTTAGATGTCTATAATCAT

Product: outer membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 217; Mature: 217

Protein sequence:

>217_residues
MRALVITTVVGAAVALAGCQTTGNNLGGVEYDKAALGTLIGAAAGYGISKSSANSSRQNNRAAAIGAILGGASGLYLDQK
EKKLRQQMAGTGVEVNRNPDGSVGLVMPGNITFDTNKSNIKPNFYSTLNKVAQTLAEDNKSAILVTGYTDNTGNDSINIP
LSQARAQSVANYLSGQGVSSSRINAQGYGSSNPIASNATAQGREQNRRVEISIYERQ

Sequences:

>Translated_217_residues
MRALVITTVVGAAVALAGCQTTGNNLGGVEYDKAALGTLIGAAAGYGISKSSANSSRQNNRAAAIGAILGGASGLYLDQK
EKKLRQQMAGTGVEVNRNPDGSVGLVMPGNITFDTNKSNIKPNFYSTLNKVAQTLAEDNKSAILVTGYTDNTGNDSINIP
LSQARAQSVANYLSGQGVSSSRINAQGYGSSNPIASNATAQGREQNRRVEISIYERQ
>Mature_217_residues
MRALVITTVVGAAVALAGCQTTGNNLGGVEYDKAALGTLIGAAAGYGISKSSANSSRQNNRAAAIGAILGGASGLYLDQK
EKKLRQQMAGTGVEVNRNPDGSVGLVMPGNITFDTNKSNIKPNFYSTLNKVAQTLAEDNKSAILVTGYTDNTGNDSINIP
LSQARAQSVANYLSGQGVSSSRINAQGYGSSNPIASNATAQGREQNRRVEISIYERQ

Specific function: Unknown

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential). Cell inner membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI48994946, Length=215, Percent_Identity=47.4418604651163, Blast_Score=154, Evalue=4e-39,
Organism=Escherichia coli, GI1787191, Length=120, Percent_Identity=31.6666666666667, Blast_Score=73, Evalue=1e-14,
Organism=Escherichia coli, GI1788957, Length=115, Percent_Identity=39.1304347826087, Blast_Score=66, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001035
- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665 [H]

Pfam domain/function: PF00691 OmpA [H]

EC number: NA

Molecular weight: Translated: 22502; Mature: 22502

Theoretical pI: Translated: 9.89; Mature: 9.89

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS01068 OMPA_1 ; PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRALVITTVVGAAVALAGCQTTGNNLGGVEYDKAALGTLIGAAAGYGISKSSANSSRQNN
CCEEEHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
RAAAIGAILGGASGLYLDQKEKKLRQQMAGTGVEVNRNPDGSVGLVMPGNITFDTNKSNI
HHHHHHHHHCCCCCCEECHHHHHHHHHHCCCCEEEECCCCCCEEEEECCCEEEECCCCCC
KPNFYSTLNKVAQTLAEDNKSAILVTGYTDNTGNDSINIPLSQARAQSVANYLSGQGVSS
CCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCEEECCHHHHHHHHHHHHHCCCCCCC
SRINAQGYGSSNPIASNATAQGREQNRRVEISIYERQ
CCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECC
>Mature Secondary Structure
MRALVITTVVGAAVALAGCQTTGNNLGGVEYDKAALGTLIGAAAGYGISKSSANSSRQNN
CCEEEHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
RAAAIGAILGGASGLYLDQKEKKLRQQMAGTGVEVNRNPDGSVGLVMPGNITFDTNKSNI
HHHHHHHHHCCCCCCEECHHHHHHHHHHCCCCEEEECCCCCCEEEEECCCEEEECCCCCC
KPNFYSTLNKVAQTLAEDNKSAILVTGYTDNTGNDSINIPLSQARAQSVANYLSGQGVSS
CCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCEEECCHHHHHHHHHHHHHCCCCCCC
SRINAQGYGSSNPIASNATAQGREQNRRVEISIYERQ
CCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503; 2180922 [H]