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The map label for this gene is yciO [H]

Identifier: 50084077

GI number: 50084077

Start: 851697

End: 852332

Strand: Reverse

Name: yciO [H]

Synonym: ACIAD0865

Alternate gene names: 50084077

Gene position: 852332-851697 (Counterclockwise)

Preceding gene: 50084078

Following gene: 50084075

Centisome position: 23.68

GC content: 41.98

Gene sequence:

>636_bases
ATGAAGGAGTATCCAGATATGTTGCATTTACATATACATCCAGACAATCCACAGGCACGCTTAATCAATCAGGCTGTCGA
ACGCATACGTGCAGGTGATGTGGTGGTTTACCCAACCGATGCTGCCTACTCGATTGGTTGCCAAATCGGGAATAAATCTG
CAATGGAACGTATTGCACAGATTCGTGGTTTAGGACCAAAACATCAATACGCCATTATGTGTTGTGATTTATCCGATATC
GCAACATATGCCAAAGTCGACAATGCAATGTATCGTTTGCTTAAAGCCAATACGCCATCGATCACCACGTTTATTTTGCC
TGCAACCAGTGAAGTCCCTAAACGGTTAATGCATCCTAAGAAAAAAACCATTGGATTACGTATTCCAACTAATCCAATTT
GTCAGGCTTTACTTCAAGAACTGGGCGAACCCATTCTAACCAGTACCCTGATTTTACCAGGTCAAAGTGATCCACTGGAT
GATCCTTATGATATTGAAAATCAGTTGGGTAAGCGTGTTGATGTATTTATTGATGGCGGGTTTGGTACACTAAGTACAAC
CAGTATTGTGGATTTATCAGGTGAAAATCCAGAAGTCGTGCGCCATGGTGCAGGTGATGTCAGTGCTTTTGAATAA

Upstream 100 bases:

>100_bases
GCGAAGCGCTGGATTAGATTACATAATTTCTACTCGTCTTCACTCATTAGATCAAATACATATGATTAAATGTAAGCATT
AACTTTACAACAATAACAGA

Downstream 100 bases:

>100_bases
GCACTGACCAAAAAGCAAATCATCTGGTTAAGTCACAATAAAATCTTCCAAACGTTTTTTCTGCTTTCCAGCATGATTAA
AGTTGTCTGGATTCAACCAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 211; Mature: 211

Protein sequence:

>211_residues
MKEYPDMLHLHIHPDNPQARLINQAVERIRAGDVVVYPTDAAYSIGCQIGNKSAMERIAQIRGLGPKHQYAIMCCDLSDI
ATYAKVDNAMYRLLKANTPSITTFILPATSEVPKRLMHPKKKTIGLRIPTNPICQALLQELGEPILTSTLILPGQSDPLD
DPYDIENQLGKRVDVFIDGGFGTLSTTSIVDLSGENPEVVRHGAGDVSAFE

Sequences:

>Translated_211_residues
MKEYPDMLHLHIHPDNPQARLINQAVERIRAGDVVVYPTDAAYSIGCQIGNKSAMERIAQIRGLGPKHQYAIMCCDLSDI
ATYAKVDNAMYRLLKANTPSITTFILPATSEVPKRLMHPKKKTIGLRIPTNPICQALLQELGEPILTSTLILPGQSDPLD
DPYDIENQLGKRVDVFIDGGFGTLSTTSIVDLSGENPEVVRHGAGDVSAFE
>Mature_211_residues
MKEYPDMLHLHIHPDNPQARLINQAVERIRAGDVVVYPTDAAYSIGCQIGNKSAMERIAQIRGLGPKHQYAIMCCDLSDI
ATYAKVDNAMYRLLKANTPSITTFILPATSEVPKRLMHPKKKTIGLRIPTNPICQALLQELGEPILTSTLILPGQSDPLD
DPYDIENQLGKRVDVFIDGGFGTLSTTSIVDLSGENPEVVRHGAGDVSAFE

Specific function: Unknown

COG id: COG0009

COG function: function code J; Putative translation factor (SUA5)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 YrdC-like domain [H]

Homologues:

Organism=Escherichia coli, GI87081864, Length=201, Percent_Identity=53.7313432835821, Blast_Score=235, Evalue=2e-63,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017945
- InterPro:   IPR004388
- InterPro:   IPR006070 [H]

Pfam domain/function: PF01300 Sua5_yciO_yrdC [H]

EC number: NA

Molecular weight: Translated: 23121; Mature: 23121

Theoretical pI: Translated: 5.93; Mature: 5.93

Prosite motif: PS51163 YRDC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKEYPDMLHLHIHPDNPQARLINQAVERIRAGDVVVYPTDAAYSIGCQIGNKSAMERIAQ
CCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCEEEEECCCCEEEEEECCCHHHHHHHHH
IRGLGPKHQYAIMCCDLSDIATYAKVDNAMYRLLKANTPSITTFILPATSEVPKRLMHPK
HHCCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCHHHHHHHHCCC
KKTIGLRIPTNPICQALLQELGEPILTSTLILPGQSDPLDDPYDIENQLGKRVDVFIDGG
CCEEEEECCCCHHHHHHHHHHCCHHHHHEEEECCCCCCCCCCCCHHHHCCCEEEEEEECC
FGTLSTTSIVDLSGENPEVVRHGAGDVSAFE
CCCCCCCEEEEECCCCHHHEECCCCCCCCCC
>Mature Secondary Structure
MKEYPDMLHLHIHPDNPQARLINQAVERIRAGDVVVYPTDAAYSIGCQIGNKSAMERIAQ
CCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCEEEEECCCCEEEEEECCCHHHHHHHHH
IRGLGPKHQYAIMCCDLSDIATYAKVDNAMYRLLKANTPSITTFILPATSEVPKRLMHPK
HHCCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCHHHHHHHHCCC
KKTIGLRIPTNPICQALLQELGEPILTSTLILPGQSDPLDDPYDIENQLGKRVDVFIDGG
CCEEEEECCCCHHHHHHHHHHCCHHHHHEEEECCCCCCCCCCCCHHHHCCCEEEEEEECC
FGTLSTTSIVDLSGENPEVVRHGAGDVSAFE
CCCCCCCEEEEECCCCHHHEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]