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The map label for this gene is yhdW [H]

Identifier: 50083865

GI number: 50083865

Start: 620988

End: 621704

Strand: Reverse

Name: yhdW [H]

Synonym: ACIAD0632

Alternate gene names: 50083865

Gene position: 621704-620988 (Counterclockwise)

Preceding gene: 50083866

Following gene: 50083863

Centisome position: 17.28

GC content: 41.56

Gene sequence:

>717_bases
ATGCGTATTATTGGTCATCGTGGTGCCCGAGGCGAGGCACCTGAAAATACACTTGGTGGATTTGAATATCTTAAAAAGAT
TGGCATCCGTGCAGTAGAATTTGATGTTCGTCAGCTTAAAGATGACACCACCATTGTCATTCACGATGATTCTTTTTTAA
GAACGACAGGACATGATATTTCAGTTTATCACTGTTTACCTGATGACTTGGGTCAGTACGATCATCGTCAAAACTGGCCT
TTATGGACACAAGCTGAGTTTACACCTACATTCACTCAAGTCATGTCTGTATTAAAAGACTTTGAACATATTGAGGTCGA
GGTTAAGCATGTGACTGACCTAGCGCAGGCAGAACGACTGATTGCACGGCTAGATACCGAGCTAAAAAACTTTCATGATC
AAATTACAATTACCAGTTTTGATGAAAAAGTTTTACAAACGCTACAAATCCAGCAGAGCCGTTTTAAACGTGGTTTTCTG
ATTGAACAAGATATCAAAGCCAGAGCTATCGAAAAGGCGCTTGAACTGGGATGCTGCCACATCGGCTGGATGGACAAGCT
CGCAACCACACAAATGATTCAGCTTTCACACGAGGCACAGCTTAATATCAGCGTATGGACTGTCAATGACGTTGAGCGTG
CCAAAATATTGAGAGATGAAGGAATTCAAGGCTTAATCACGGATTTCCCAGGTTTAATGCAACAACAGCTAAAATGA

Upstream 100 bases:

>100_bases
ACAGCGTGAATCTGGTGGCAGCGAAATGCTTTGGCAAAAAAATATTAATGACACTATTTAAGCGCTAAAATAATGCATCG
TTTATTGGTTTAGAGTACCT

Downstream 100 bases:

>100_bases
AGAAAGGCAGGAGAGCTCCTGCCTATCTTTATTTTCTTTGTGCTTTGATCAAAATTTGTGAGTTTTGATCCAATAACAAT
AATTCGCTGCCTTGTACCTT

Product: glycerophosphodiester phosphodiesterase

Products: NA

Alternate protein names: Glycerophosphodiester phosphodiesterase [H]

Number of amino acids: Translated: 238; Mature: 238

Protein sequence:

>238_residues
MRIIGHRGARGEAPENTLGGFEYLKKIGIRAVEFDVRQLKDDTTIVIHDDSFLRTTGHDISVYHCLPDDLGQYDHRQNWP
LWTQAEFTPTFTQVMSVLKDFEHIEVEVKHVTDLAQAERLIARLDTELKNFHDQITITSFDEKVLQTLQIQQSRFKRGFL
IEQDIKARAIEKALELGCCHIGWMDKLATTQMIQLSHEAQLNISVWTVNDVERAKILRDEGIQGLITDFPGLMQQQLK

Sequences:

>Translated_238_residues
MRIIGHRGARGEAPENTLGGFEYLKKIGIRAVEFDVRQLKDDTTIVIHDDSFLRTTGHDISVYHCLPDDLGQYDHRQNWP
LWTQAEFTPTFTQVMSVLKDFEHIEVEVKHVTDLAQAERLIARLDTELKNFHDQITITSFDEKVLQTLQIQQSRFKRGFL
IEQDIKARAIEKALELGCCHIGWMDKLATTQMIQLSHEAQLNISVWTVNDVERAKILRDEGIQGLITDFPGLMQQQLK
>Mature_238_residues
MRIIGHRGARGEAPENTLGGFEYLKKIGIRAVEFDVRQLKDDTTIVIHDDSFLRTTGHDISVYHCLPDDLGQYDHRQNWP
LWTQAEFTPTFTQVMSVLKDFEHIEVEVKHVTDLAQAERLIARLDTELKNFHDQITITSFDEKVLQTLQIQQSRFKRGFL
IEQDIKARAIEKALELGCCHIGWMDKLATTQMIQLSHEAQLNISVWTVNDVERAKILRDEGIQGLITDFPGLMQQQLK

Specific function: Glycerophosphoryl diester phosphodiesterase hydrolyzes deacylated phospholipids to sn-glycerol 3-phosphate (G3P) and the corresponding alcohols [H]

COG id: COG0584

COG function: function code C; Glycerophosphoryl diester phosphodiesterase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 GDPD domain [H]

Homologues:

Organism=Escherichia coli, GI1789858, Length=229, Percent_Identity=27.5109170305677, Blast_Score=75, Evalue=4e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004129
- InterPro:   IPR017946 [H]

Pfam domain/function: PF03009 GDPD [H]

EC number: =3.1.4.46 [H]

Molecular weight: Translated: 27467; Mature: 27467

Theoretical pI: Translated: 5.78; Mature: 5.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRIIGHRGARGEAPENTLGGFEYLKKIGIRAVEFDVRQLKDDTTIVIHDDSFLRTTGHDI
CCCCCCCCCCCCCCCCCCHHHHHHHHHCCEEEEHHHHHCCCCCEEEEECCCEEEECCCCE
SVYHCLPDDLGQYDHRQNWPLWTQAEFTPTFTQVMSVLKDFEHIEVEVKHVTDLAQAERL
EEEEECCHHHCCCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHEEHHHHHHHHHHHHHH
IARLDTELKNFHDQITITSFDEKVLQTLQIQQSRFKRGFLIEQDIKARAIEKALELGCCH
HHHHHHHHHHHHCEEEEEHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCC
IGWMDKLATTQMIQLSHEAQLNISVWTVNDVERAKILRDEGIQGLITDFPGLMQQQLK
CCHHHHHHHHHHHHHCCCCEEEEEEEEECCHHHHHHHHHCCCCHHHHHCHHHHHHHCC
>Mature Secondary Structure
MRIIGHRGARGEAPENTLGGFEYLKKIGIRAVEFDVRQLKDDTTIVIHDDSFLRTTGHDI
CCCCCCCCCCCCCCCCCCHHHHHHHHHCCEEEEHHHHHCCCCCEEEEECCCEEEECCCCE
SVYHCLPDDLGQYDHRQNWPLWTQAEFTPTFTQVMSVLKDFEHIEVEVKHVTDLAQAERL
EEEEECCHHHCCCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHEEHHHHHHHHHHHHHH
IARLDTELKNFHDQITITSFDEKVLQTLQIQQSRFKRGFLIEQDIKARAIEKALELGCCH
HHHHHHHHHHHHCEEEEEHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCC
IGWMDKLATTQMIQLSHEAQLNISVWTVNDVERAKILRDEGIQGLITDFPGLMQQQLK
CCHHHHHHHHHHHHHCCCCEEEEEEEEECCHHHHHHHHHCCCCHHHHHCHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9579061; 9384377 [H]