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The map label for this gene is ydiU [C]

Identifier: 50083862

GI number: 50083862

Start: 617510

End: 618982

Strand: Reverse

Name: ydiU [C]

Synonym: ACIAD0629

Alternate gene names: 50083862

Gene position: 618982-617510 (Counterclockwise)

Preceding gene: 50083863

Following gene: 50083861

Centisome position: 17.2

GC content: 41.34

Gene sequence:

>1473_bases
ATGTTCTTCATTTATGACTTTGCCATGATCATGCAATTTAATTCACGTTATTCTGACTTAAACGCCAAGCTTTATCATCA
ACAAGCCCCTGTACCATTAAAAGGTGCAAAAGCTGGACATTTTAATGAAGCTATCGCAGATGAATTACAATGGACATCCC
AAGAAAAGCAATCCTGGGTAGACATTTGTAGTGGTCAGAAAACTTTTGATGCCTTTAAGCCGCTGGCTATGGTCTATGCG
GGACATCAGTTTGGTCAATGGGCAGGTCAACTTGGTGATGGCCGTGGCTTGTTAATTGGTCAGGTACTTCATCGCTCAGG
ACAAACGATTGATCTGCATTTAAAGGGAGCAGGCCTAACACCTTATTCACGTATGGGAGATGGTCGCGCAGTATTACGTT
CTGTAATCCGTGAATATCTGGCGGGTCATGCACTTAACTCACTAAGGGTTGCTTCAAGTAATGCAATTGGTTTTACAACT
TCCGAACAGGGTGTGCAACGTGAAACGCTCGAACAAGGTGCCATGCTACTACGCACCTCTGACTGTCATATTCGGCTTGG
ACATTTTGAATGGATCAATCAATATGCACCTGAACTTTTGGCTGAGTTCACTCAAAAATGTATCGAGTGGCATTATCCAG
AAGCACTTCAGGCGGAGCATCCAATTTTGGCGTTTGCCGAGGGCGTCATTAAGAATACGGCCAAAATGATTGCAGACTGG
CAATTGGTAGGTTTTGCTCATGGGGTTATGAATACTGATAATTTAAATATTACAGGCTCAACACTCGATTTTGGCCCATA
TGGTTTTATGGAACGTTTCCGTCCTAACTGGATCAACAATCATTCAGATCATCAAGGTCGCTATGCTTATCAAAATCAGC
CAAGTATAGCTCACTGGAATCTCTGGATTTGGCTCAATAATCTAATTCCACTCTCAAAACCTGAAGATAAAGAAACTTTT
AAAAAACAACTGGCAGATTGTTTGGAACACTTTGAACCAACTTTCTTAACGGCTTATACCGAAGGCTTATGCAAAAAACT
GGGATTACCTGATTTTCATAAAGATAGCTTTGATTGTGGGATGGCATTCTTAAAAGTCTTACAAAGTGAACAACTGGATT
ACACGCAAAGCTTTTTAAGACTTCAAAATCATGACTACAAAGCCTTAAGAGATGATTGTCTGGATACACGCCAGTTTGAT
GATTTTCTCAATTTGTATCATCAGATTCGTGAGCATCAGGACATCACAGCACTTGATCAGACTATGTGTGACGTAAACCC
CGTTTACATCTTACGTAATCACATGGCGCAGCAGGCAATTGAACAAGCTGAACGCGGTGACTTTTCAGAAGTAGAGCGTT
TATTTACCCTACTTGCTAAGCCATTTACTCGTCAACCTGCACTTGAAAAAGAACAGGATTTGGCACCTCTGCCAAGTGAT
GTGCCTGAAATTATGGTGAGTTGTTCTTCTTAA

Upstream 100 bases:

>100_bases
CCTTGATGCGCAACGTTAAAAAGCGCAACACTGTGTCTGAATAAGAAAGAAGTGATTATACAAAGCTCCCGCTCAGGGGG
CTTTTTTATTTGCTATAGTA

Downstream 100 bases:

>100_bases
AGTACATAAAGCAGGCTCACTTATCCCCATTTTCTGTGGATAACACTGTGATTATCCACAGGATAACGTTCTATCTATCT
TAGCTCATAGATATAAAACC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 490; Mature: 490

Protein sequence:

>490_residues
MFFIYDFAMIMQFNSRYSDLNAKLYHQQAPVPLKGAKAGHFNEAIADELQWTSQEKQSWVDICSGQKTFDAFKPLAMVYA
GHQFGQWAGQLGDGRGLLIGQVLHRSGQTIDLHLKGAGLTPYSRMGDGRAVLRSVIREYLAGHALNSLRVASSNAIGFTT
SEQGVQRETLEQGAMLLRTSDCHIRLGHFEWINQYAPELLAEFTQKCIEWHYPEALQAEHPILAFAEGVIKNTAKMIADW
QLVGFAHGVMNTDNLNITGSTLDFGPYGFMERFRPNWINNHSDHQGRYAYQNQPSIAHWNLWIWLNNLIPLSKPEDKETF
KKQLADCLEHFEPTFLTAYTEGLCKKLGLPDFHKDSFDCGMAFLKVLQSEQLDYTQSFLRLQNHDYKALRDDCLDTRQFD
DFLNLYHQIREHQDITALDQTMCDVNPVYILRNHMAQQAIEQAERGDFSEVERLFTLLAKPFTRQPALEKEQDLAPLPSD
VPEIMVSCSS

Sequences:

>Translated_490_residues
MFFIYDFAMIMQFNSRYSDLNAKLYHQQAPVPLKGAKAGHFNEAIADELQWTSQEKQSWVDICSGQKTFDAFKPLAMVYA
GHQFGQWAGQLGDGRGLLIGQVLHRSGQTIDLHLKGAGLTPYSRMGDGRAVLRSVIREYLAGHALNSLRVASSNAIGFTT
SEQGVQRETLEQGAMLLRTSDCHIRLGHFEWINQYAPELLAEFTQKCIEWHYPEALQAEHPILAFAEGVIKNTAKMIADW
QLVGFAHGVMNTDNLNITGSTLDFGPYGFMERFRPNWINNHSDHQGRYAYQNQPSIAHWNLWIWLNNLIPLSKPEDKETF
KKQLADCLEHFEPTFLTAYTEGLCKKLGLPDFHKDSFDCGMAFLKVLQSEQLDYTQSFLRLQNHDYKALRDDCLDTRQFD
DFLNLYHQIREHQDITALDQTMCDVNPVYILRNHMAQQAIEQAERGDFSEVERLFTLLAKPFTRQPALEKEQDLAPLPSD
VPEIMVSCSS
>Mature_490_residues
MFFIYDFAMIMQFNSRYSDLNAKLYHQQAPVPLKGAKAGHFNEAIADELQWTSQEKQSWVDICSGQKTFDAFKPLAMVYA
GHQFGQWAGQLGDGRGLLIGQVLHRSGQTIDLHLKGAGLTPYSRMGDGRAVLRSVIREYLAGHALNSLRVASSNAIGFTT
SEQGVQRETLEQGAMLLRTSDCHIRLGHFEWINQYAPELLAEFTQKCIEWHYPEALQAEHPILAFAEGVIKNTAKMIADW
QLVGFAHGVMNTDNLNITGSTLDFGPYGFMERFRPNWINNHSDHQGRYAYQNQPSIAHWNLWIWLNNLIPLSKPEDKETF
KKQLADCLEHFEPTFLTAYTEGLCKKLGLPDFHKDSFDCGMAFLKVLQSEQLDYTQSFLRLQNHDYKALRDDCLDTRQFD
DFLNLYHQIREHQDITALDQTMCDVNPVYILRNHMAQQAIEQAERGDFSEVERLFTLLAKPFTRQPALEKEQDLAPLPSD
VPEIMVSCSS

Specific function: Unknown

COG id: COG0397

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0061 (SELO) family [H]

Homologues:

Organism=Homo sapiens, GI32880229, Length=348, Percent_Identity=37.6436781609195, Blast_Score=211, Evalue=2e-54,
Organism=Escherichia coli, GI1787999, Length=490, Percent_Identity=39.5918367346939, Blast_Score=346, Evalue=2e-96,
Organism=Saccharomyces cerevisiae, GI6325034, Length=477, Percent_Identity=29.1404612159329, Blast_Score=173, Evalue=5e-44,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003846 [H]

Pfam domain/function: PF02696 UPF0061 [H]

EC number: NA

Molecular weight: Translated: 56006; Mature: 56006

Theoretical pI: Translated: 5.87; Mature: 5.87

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFFIYDFAMIMQFNSRYSDLNAKLYHQQAPVPLKGAKAGHFNEAIADELQWTSQEKQSWV
CEEHHHHHHHHHHHCHHHHCCHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
DICSGQKTFDAFKPLAMVYAGHQFGQWAGQLGDGRGLLIGQVLHRSGQTIDLHLKGAGLT
HHHCCCHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCHHHHHHHHCCCCEEEEEEECCCCC
PYSRMGDGRAVLRSVIREYLAGHALNSLRVASSNAIGFTTSEQGVQRETLEQGAMLLRTS
CHHHCCCCHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCCCCHHHHHHHCCCEEEEEC
DCHIRLGHFEWINQYAPELLAEFTQKCIEWHYPEALQAEHPILAFAEGVIKNTAKMIADW
CCEEEECHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHH
QLVGFAHGVMNTDNLNITGSTLDFGPYGFMERFRPNWINNHSDHQGRYAYQNQPSIAHWN
HHHHHHHCCCCCCCCEEECCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEE
LWIWLNNLIPLSKPEDKETFKKQLADCLEHFEPTFLTAYTEGLCKKLGLPDFHKDSFDCG
EEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCHHHH
MAFLKVLQSEQLDYTQSFLRLQNHDYKALRDDCLDTRQFDDFLNLYHQIREHQDITALDQ
HHHHHHHHHHCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
TMCDVNPVYILRNHMAQQAIEQAERGDFSEVERLFTLLAKPFTRQPALEKEQDLAPLPSD
HHHCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCH
VPEIMVSCSS
HHHHHHCCCC
>Mature Secondary Structure
MFFIYDFAMIMQFNSRYSDLNAKLYHQQAPVPLKGAKAGHFNEAIADELQWTSQEKQSWV
CEEHHHHHHHHHHHCHHHHCCHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
DICSGQKTFDAFKPLAMVYAGHQFGQWAGQLGDGRGLLIGQVLHRSGQTIDLHLKGAGLT
HHHCCCHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCHHHHHHHHCCCCEEEEEEECCCCC
PYSRMGDGRAVLRSVIREYLAGHALNSLRVASSNAIGFTTSEQGVQRETLEQGAMLLRTS
CHHHCCCCHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCCCCHHHHHHHCCCEEEEEC
DCHIRLGHFEWINQYAPELLAEFTQKCIEWHYPEALQAEHPILAFAEGVIKNTAKMIADW
CCEEEECHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHH
QLVGFAHGVMNTDNLNITGSTLDFGPYGFMERFRPNWINNHSDHQGRYAYQNQPSIAHWN
HHHHHHHCCCCCCCCEEECCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEE
LWIWLNNLIPLSKPEDKETFKKQLADCLEHFEPTFLTAYTEGLCKKLGLPDFHKDSFDCG
EEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCHHHH
MAFLKVLQSEQLDYTQSFLRLQNHDYKALRDDCLDTRQFDDFLNLYHQIREHQDITALDQ
HHHHHHHHHHCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
TMCDVNPVYILRNHMAQQAIEQAERGDFSEVERLFTLLAKPFTRQPALEKEQDLAPLPSD
HHHCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCH
VPEIMVSCSS
HHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA