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The map label for this gene is pilF [C]

Identifier: 50083795

GI number: 50083795

Start: 550472

End: 551272

Strand: Direct

Name: pilF [C]

Synonym: ACIAD0558

Alternate gene names: 50083795

Gene position: 550472-551272 (Clockwise)

Preceding gene: 50083794

Following gene: 50083796

Centisome position: 15.3

GC content: 42.45

Gene sequence:

>801_bases
TTGAGCAAGTGGACAATAAACAAAACGTTGGGTTGTGCCGCCATTGTAGGGGCGTTTATTTTGTCTGGATGTCAGACTGT
TCCAACCACCAAAGACCCTGAAAAGGGTGTAAAAGTACGTACTCAACTTGCTGCCGAATATATTAAATCTGGTGATCTTG
ATTCGGCTAAACGTGCTTTAGATCAAGCCTTAAAAGTAAATCCCAAAGATAGCAGTGCCAACATGATGATGGGTGTGCTG
CTGCAACAAGAAGGTAGTCGCCCTAACCTTGAAAAAGCAGATGCTTATTTTGAGCGAGCTGTACAGCTTGATCCAGAAAA
TGCACAAGCGCATAACAACTATGGTACCTATTTGTATCAGATGAAACGTTATCATGATGCAATTCAACAATTGACACTGG
CTGGTAGTTCATTAGGATATGACCAGCGCTATCGTGCATTGGAAAATATTGGGCGAATTTATTTGCATCTGGGTGGAGTC
GCAAATGCTGAAAAAATGTTCAGTCAGGCGCTTCAGGCAAATCGTGATTCTTCCGTTTCGATGTTAGAGTTAGCAGAGAT
TTATTATTTGCAACAAAGAATTCCTGCCGCAACAGGTATGTACGAACAATATGTGCGTACAGTTGGGCAGAAAAATCAGG
GTGCGCGAGCACTCTGGATTGGTATTCGTGTGGCGAGAGCCAATGCCGATCGGACTGGGGTACAGGTGTTAGTTAATCAG
CTTCGTATTTTTTACCCAGATAGTTCAGAATATCAACGTTATTTGAAATTACAGTACAGTACTGAGGCCGTATGGAAATA
A

Upstream 100 bases:

>100_bases
AGTCGCAGATCGGACACGTCGTGCAGAACAATGGAAAAAGAAAGTTGCTGAGCGACAAGAGATTATTCGCTCGCAAGGAT
AATTATCTGGGGGTGGTGGG

Downstream 100 bases:

>100_bases
ATCCTAATTCACAGCAGCCAACTGGCTCAAGTTTACCCACTTCTGCATTAGGAAATGTACAACGTCCCGGTGAGTATTTA
CGTCAAATTCGTATTGCGAA

Product: type 4 fimbrial biogenesis protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 266; Mature: 265

Protein sequence:

>266_residues
MSKWTINKTLGCAAIVGAFILSGCQTVPTTKDPEKGVKVRTQLAAEYIKSGDLDSAKRALDQALKVNPKDSSANMMMGVL
LQQEGSRPNLEKADAYFERAVQLDPENAQAHNNYGTYLYQMKRYHDAIQQLTLAGSSLGYDQRYRALENIGRIYLHLGGV
ANAEKMFSQALQANRDSSVSMLELAEIYYLQQRIPAATGMYEQYVRTVGQKNQGARALWIGIRVARANADRTGVQVLVNQ
LRIFYPDSSEYQRYLKLQYSTEAVWK

Sequences:

>Translated_266_residues
MSKWTINKTLGCAAIVGAFILSGCQTVPTTKDPEKGVKVRTQLAAEYIKSGDLDSAKRALDQALKVNPKDSSANMMMGVL
LQQEGSRPNLEKADAYFERAVQLDPENAQAHNNYGTYLYQMKRYHDAIQQLTLAGSSLGYDQRYRALENIGRIYLHLGGV
ANAEKMFSQALQANRDSSVSMLELAEIYYLQQRIPAATGMYEQYVRTVGQKNQGARALWIGIRVARANADRTGVQVLVNQ
LRIFYPDSSEYQRYLKLQYSTEAVWK
>Mature_265_residues
SKWTINKTLGCAAIVGAFILSGCQTVPTTKDPEKGVKVRTQLAAEYIKSGDLDSAKRALDQALKVNPKDSSANMMMGVLL
QQEGSRPNLEKADAYFERAVQLDPENAQAHNNYGTYLYQMKRYHDAIQQLTLAGSSLGYDQRYRALENIGRIYLHLGGVA
NAEKMFSQALQANRDSSVSMLELAEIYYLQQRIPAATGMYEQYVRTVGQKNQGARALWIGIRVARANADRTGVQVLVNQL
RIFYPDSSEYQRYLKLQYSTEAVWK

Specific function: Unknown

COG id: COG3063

COG function: function code NU; Tfp pilus assembly protein PilF

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013360
- InterPro:   IPR013026
- InterPro:   IPR011990
- InterPro:   IPR019734 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 29878; Mature: 29747

Theoretical pI: Translated: 9.52; Mature: 9.52

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS50005 TPR ; PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKWTINKTLGCAAIVGAFILSGCQTVPTTKDPEKGVKVRTQLAAEYIKSGDLDSAKRAL
CCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHH
DQALKVNPKDSSANMMMGVLLQQEGSRPNLEKADAYFERAVQLDPENAQAHNNYGTYLYQ
HHHHCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHH
MKRYHDAIQQLTLAGSSLGYDQRYRALENIGRIYLHLGGVANAEKMFSQALQANRDSSVS
HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCEEEEEECCCCCHHHHHHHHHHCCCCCCHH
MLELAEIYYLQQRIPAATGMYEQYVRTVGQKNQGARALWIGIRVARANADRTGVQVLVNQ
HHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEECCCCHHHHHHHHHH
LRIFYPDSSEYQRYLKLQYSTEAVWK
HHEECCCCHHHHHHHHHEECHHHHCC
>Mature Secondary Structure 
SKWTINKTLGCAAIVGAFILSGCQTVPTTKDPEKGVKVRTQLAAEYIKSGDLDSAKRAL
CCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHH
DQALKVNPKDSSANMMMGVLLQQEGSRPNLEKADAYFERAVQLDPENAQAHNNYGTYLYQ
HHHHCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHH
MKRYHDAIQQLTLAGSSLGYDQRYRALENIGRIYLHLGGVANAEKMFSQALQANRDSSVS
HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCEEEEEECCCCCHHHHHHHHHHCCCCCCHH
MLELAEIYYLQQRIPAATGMYEQYVRTVGQKNQGARALWIGIRVARANADRTGVQVLVNQ
HHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEECCCCHHHHHHHHHH
LRIFYPDSSEYQRYLKLQYSTEAVWK
HHEECCCCHHHHHHHHHEECHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]