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The map label for this gene is exbD [H]

Identifier: 50083747

GI number: 50083747

Start: 499568

End: 499972

Strand: Direct

Name: exbD [H]

Synonym: ACIAD0509

Alternate gene names: 50083747

Gene position: 499568-499972 (Clockwise)

Preceding gene: 50083746

Following gene: 50083750

Centisome position: 13.88

GC content: 41.73

Gene sequence:

>405_bases
ATGGCTTTTCAACTGGGTGAAGACCACGACAGTGGCATGAATGAGATGAATCTCATTCCGTTAATTGACATTATGTTGGT
ACTGATGATCATCTTTTTGGTCACAGCAACGGTTGCAAACCCATCGGTACCATTAAGTTTGCCAAAAACAACAGCTGAAA
TTCAGCCACCACCACCGAAAGAAATTACCATTAGTATTAATTCAAATGGTGATGTTTCGTGGGGACAAGAAGCAATTACA
TTGGATGAGTTGCAAAAACGCTTTCAAGAAGCTGGCCAGTCAGCTCAGAAACCAACAGTGATGTTAAAAGCAGATAAAGA
ATCACGTTACGATACAGTAGCACAAGTGATGTCTCGCGCGAGTGGAGCCGGACTCAGCGATATTGCTTTTGTCAGTGAAA
ATTAA

Upstream 100 bases:

>100_bases
CACATAGCTTATTGATTGATACCATGTTGCAGCAAGAATCTGTAGATCCAAAATCTGAAACGAAGGCAGCGCAACAAAGC
TATGCTGGAGGTCAAGCTTA

Downstream 100 bases:

>100_bases
ACGCGCTTGATTCAGCGCAATAAAAAAAGCAACTCGATCGAGTTGCTTTTTTTTGTTCAGGCTTTGAGTAAAGACTGAAA
TTTGCTACGTAATTTGGCAA

Product: biopolymer transport protein (ExbD)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 134; Mature: 133

Protein sequence:

>134_residues
MAFQLGEDHDSGMNEMNLIPLIDIMLVLMIIFLVTATVANPSVPLSLPKTTAEIQPPPPKEITISINSNGDVSWGQEAIT
LDELQKRFQEAGQSAQKPTVMLKADKESRYDTVAQVMSRASGAGLSDIAFVSEN

Sequences:

>Translated_134_residues
MAFQLGEDHDSGMNEMNLIPLIDIMLVLMIIFLVTATVANPSVPLSLPKTTAEIQPPPPKEITISINSNGDVSWGQEAIT
LDELQKRFQEAGQSAQKPTVMLKADKESRYDTVAQVMSRASGAGLSDIAFVSEN
>Mature_133_residues
AFQLGEDHDSGMNEMNLIPLIDIMLVLMIIFLVTATVANPSVPLSLPKTTAEIQPPPPKEITISINSNGDVSWGQEAITL
DELQKRFQEAGQSAQKPTVMLKADKESRYDTVAQVMSRASGAGLSDIAFVSEN

Specific function: Involved in the tonB-dependent energy-dependent transport of various receptor-bound substrates [H]

COG id: COG0848

COG function: function code U; Biopolymer transport protein

Gene ontology:

Cell location: Cell inner membrane; Single-pass type II membrane protein (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the exbD/tolR family [H]

Homologues:

Organism=Escherichia coli, GI1789380, Length=135, Percent_Identity=32.5925925925926, Blast_Score=81, Evalue=2e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003400 [H]

Pfam domain/function: PF02472 ExbD [H]

EC number: NA

Molecular weight: Translated: 14517; Mature: 14386

Theoretical pI: Translated: 4.18; Mature: 4.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.2 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAFQLGEDHDSGMNEMNLIPLIDIMLVLMIIFLVTATVANPSVPLSLPKTTAEIQPPPPK
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
EITISINSNGDVSWGQEAITLDELQKRFQEAGQSAQKPTVMLKADKESRYDTVAQVMSRA
EEEEEECCCCCCCCCCHHCCHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHH
SGAGLSDIAFVSEN
CCCCCCCEEEEECC
>Mature Secondary Structure 
AFQLGEDHDSGMNEMNLIPLIDIMLVLMIIFLVTATVANPSVPLSLPKTTAEIQPPPPK
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
EITISINSNGDVSWGQEAITLDELQKRFQEAGQSAQKPTVMLKADKESRYDTVAQVMSRA
EEEEEECCCCCCCCCCHHCCHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHH
SGAGLSDIAFVSEN
CCCCCCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9140974 [H]