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The map label for this gene is rbcR [H]

Identifier: 50083708

GI number: 50083708

Start: 459565

End: 460446

Strand: Reverse

Name: rbcR [H]

Synonym: ACIAD0461

Alternate gene names: 50083708

Gene position: 460446-459565 (Counterclockwise)

Preceding gene: 50083709

Following gene: 50083707

Centisome position: 12.8

GC content: 42.52

Gene sequence:

>882_bases
ATGAATCTTGCTGCGTTTGAAGCCTTTATCAAAGTGATGGAAACAGGCTCAATTTCCTTGGCAGCAGATCAACTTTTTAT
TACGCAACCCGCGGTTACCAAACGTATTCATAGTCTTGAAGATTATTTTGGGGTTAAGCTATTTGAATCGGCAGGTCGTG
GTATTCAGGCCACTCATGCGGCGCACTCATTACTTCCCAAAGTCAAAAACTGGCTTAATGAACTGGGCGAAATTCACCAT
ACCTTAAGTCATGAACATGATCAGGTACAAGGACGTCTTAAGATCGGAACCAGCCATCACATTGGCTTGCATCATTTACC
CAAACCTTTACGTAACTATGTACAACAATTTCCTGATGTGACACTAGATGTGCATTTTGTCGATTCAGAACAAGCACATG
AACAGGTGTTTGCAGGCGATCTGGAACTGGCTTTTTTGACACTGCCACCTCAGGGTGATGAACGCCTAAAGTATCTCACG
ATCTGGAACGATCCTTTGGTTTTTGTGGTGGCGCCTTTTCATCCTCTAGCGCATAAACAAAATATTGAATTACAAGACTT
ACTTGAATATCCAAGCCTCTTACCATCCTCACAGACCTATACCAGTCAAATTACCTTACAGGCCTTTGAAAAACATGGTT
TAAAACCCAAAATCACCATGAGCAATAATCCACTCGAATCTATCCGCATGCTGGTTTCTATTGGATTGGGCTGGTCGGTT
TTGCCCAAAACTTTACTTAATCAGGATTTAACCCAGTTACAGCTTGAAGTTGATCTGAATCGTCAGCTTGGCATTGTATG
GCATCCCGCCCGTATTCAGTCTAAAGCAGCAAAAGCACTAATCGCGTATGCACAGGATTCAACGCTCACTGAATCACTTT
AA

Upstream 100 bases:

>100_bases
CATTAATTGTTTGCACTTGATCTGATTTGACTACTACAATGTAAAAAGCTGGTTTGCCTTCATACCCGCTTATTTTACAT
TGAGAAATTGGATTTAAATT

Downstream 100 bases:

>100_bases
ATCAACACCAATTTCATCAATGACTTTACCGAAATATAATAAAATTCAAATTAGAATGGAGTAACGTGTTGAATATACCC
AACCGTGAATCGGCTTAAAA

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 293; Mature: 293

Protein sequence:

>293_residues
MNLAAFEAFIKVMETGSISLAADQLFITQPAVTKRIHSLEDYFGVKLFESAGRGIQATHAAHSLLPKVKNWLNELGEIHH
TLSHEHDQVQGRLKIGTSHHIGLHHLPKPLRNYVQQFPDVTLDVHFVDSEQAHEQVFAGDLELAFLTLPPQGDERLKYLT
IWNDPLVFVVAPFHPLAHKQNIELQDLLEYPSLLPSSQTYTSQITLQAFEKHGLKPKITMSNNPLESIRMLVSIGLGWSV
LPKTLLNQDLTQLQLEVDLNRQLGIVWHPARIQSKAAKALIAYAQDSTLTESL

Sequences:

>Translated_293_residues
MNLAAFEAFIKVMETGSISLAADQLFITQPAVTKRIHSLEDYFGVKLFESAGRGIQATHAAHSLLPKVKNWLNELGEIHH
TLSHEHDQVQGRLKIGTSHHIGLHHLPKPLRNYVQQFPDVTLDVHFVDSEQAHEQVFAGDLELAFLTLPPQGDERLKYLT
IWNDPLVFVVAPFHPLAHKQNIELQDLLEYPSLLPSSQTYTSQITLQAFEKHGLKPKITMSNNPLESIRMLVSIGLGWSV
LPKTLLNQDLTQLQLEVDLNRQLGIVWHPARIQSKAAKALIAYAQDSTLTESL
>Mature_293_residues
MNLAAFEAFIKVMETGSISLAADQLFITQPAVTKRIHSLEDYFGVKLFESAGRGIQATHAAHSLLPKVKNWLNELGEIHH
TLSHEHDQVQGRLKIGTSHHIGLHHLPKPLRNYVQQFPDVTLDVHFVDSEQAHEQVFAGDLELAFLTLPPQGDERLKYLT
IWNDPLVFVVAPFHPLAHKQNIELQDLLEYPSLLPSSQTYTSQITLQAFEKHGLKPKITMSNNPLESIRMLVSIGLGWSV
LPKTLLNQDLTQLQLEVDLNRQLGIVWHPARIQSKAAKALIAYAQDSTLTESL

Specific function: Trans-acting transcriptional regulator of RuBisCO genes (rbcL and rbcS) expression [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787530, Length=227, Percent_Identity=27.7533039647577, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI157672245, Length=283, Percent_Identity=25.7950530035336, Blast_Score=93, Evalue=3e-20,
Organism=Escherichia coli, GI1787879, Length=280, Percent_Identity=26.7857142857143, Blast_Score=84, Evalue=9e-18,
Organism=Escherichia coli, GI145693105, Length=285, Percent_Identity=24.2105263157895, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1790399, Length=277, Percent_Identity=23.4657039711191, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1788481, Length=272, Percent_Identity=25.3676470588235, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1788887, Length=255, Percent_Identity=25.4901960784314, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI1789204, Length=250, Percent_Identity=28.4, Blast_Score=75, Evalue=6e-15,
Organism=Escherichia coli, GI1788748, Length=290, Percent_Identity=23.1034482758621, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI87081904, Length=208, Percent_Identity=24.5192307692308, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI87082132, Length=261, Percent_Identity=24.5210727969349, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1788296, Length=234, Percent_Identity=25.2136752136752, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1789506, Length=287, Percent_Identity=24.0418118466899, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1790262, Length=234, Percent_Identity=28.6324786324786, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1787601, Length=242, Percent_Identity=23.1404958677686, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1789173, Length=209, Percent_Identity=26.7942583732057, Blast_Score=62, Evalue=4e-11,
Organism=Escherichia coli, GI1786713, Length=256, Percent_Identity=28.515625, Blast_Score=61, Evalue=7e-11,
Organism=Escherichia coli, GI1788297, Length=247, Percent_Identity=21.0526315789474, Blast_Score=61, Evalue=8e-11,
Organism=Escherichia coli, GI1790208, Length=249, Percent_Identity=21.285140562249, Blast_Score=61, Evalue=9e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32937; Mature: 32937

Theoretical pI: Translated: 6.66; Mature: 6.66

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLAAFEAFIKVMETGSISLAADQLFITQPAVTKRIHSLEDYFGVKLFESAGRGIQATHA
CCHHHHHHHHHHHHCCCEEEEECEEEEECHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
AHSLLPKVKNWLNELGEIHHTLSHEHDQVQGRLKIGTSHHIGLHHLPKPLRNYVQQFPDV
HHHHHHHHHHHHHHHHHHHHHHCCCCHHCCEEEEECCCCCCCHHHCCHHHHHHHHHCCCC
TLDVHFVDSEQAHEQVFAGDLELAFLTLPPQGDERLKYLTIWNDPLVFVVAPFHPLAHKQ
EEEEEECCCHHHHHHHHCCCEEEEEEECCCCCCCCEEEEEEECCCEEEEEECCCCCCCCC
NIELQDLLEYPSLLPSSQTYTSQITLQAFEKHGLKPKITMSNNPLESIRMLVSIGLGWSV
CCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHCCCHHH
LPKTLLNQDLTQLQLEVDLNRQLGIVWHPARIQSKAAKALIAYAQDSTLTESL
HHHHHHCCCHHEEEEEEECCCCEEEEECCHHHHHHHHHHHHHHHCCCHHHCCC
>Mature Secondary Structure
MNLAAFEAFIKVMETGSISLAADQLFITQPAVTKRIHSLEDYFGVKLFESAGRGIQATHA
CCHHHHHHHHHHHHCCCEEEEECEEEEECHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
AHSLLPKVKNWLNELGEIHHTLSHEHDQVQGRLKIGTSHHIGLHHLPKPLRNYVQQFPDV
HHHHHHHHHHHHHHHHHHHHHHCCCCHHCCEEEEECCCCCCCHHHCCHHHHHHHHHCCCC
TLDVHFVDSEQAHEQVFAGDLELAFLTLPPQGDERLKYLTIWNDPLVFVVAPFHPLAHKQ
EEEEEECCCHHHHHHHHCCCEEEEEEECCCCCCCCEEEEEEECCCEEEEEECCCCCCCCC
NIELQDLLEYPSLLPSSQTYTSQITLQAFEKHGLKPKITMSNNPLESIRMLVSIGLGWSV
CCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHCCCHHH
LPKTLLNQDLTQLQLEVDLNRQLGIVWHPARIQSKAAKALIAYAQDSTLTESL
HHHHHHCCCHHEEEEEEECCCCEEEEECCHHHHHHHHHHHHHHHCCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]