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The map label for this gene is hifC [H]

Identifier: 50083648

GI number: 50083648

Start: 382220

End: 384772

Strand: Direct

Name: hifC [H]

Synonym: ACIAD0389

Alternate gene names: 50083648

Gene position: 382220-384772 (Clockwise)

Preceding gene: 50083647

Following gene: 50083649

Centisome position: 10.62

GC content: 35.49

Gene sequence:

>2553_bases
ATGAAAATCAGATATTCGAGTAGTTTTTTACTGCTTATTCTTCTTGTAAGCAAGTCTTATGCTGCTTCCGAATCAGATAT
TTCTGGTCGAAATCCGGAAAAAATATTAGCTCAAGAAAATAAAAATGTTTTAACATTTAGTTCCGCTTCATTGTTTGGAG
GACAGAGTCAGAGTGTTGATCTGTCCATATTTCGTAATGCGAATTATGTTGCCGAAGGTACTTATATCGTAGATACGGCA
GTTAATGAGCGTTCGATTGGTGAATTAAAAGTATTATTTAAGCATTTGGATGCAAACTCAACCGCAGTTTTATGTATTGA
TGCAGATATATTAAAACGTCTGGATTTGCAGCCACACTATTTGGCATCACTTGCTAAAAAAGACTGCTTGACTATTAAAG
ATATTAATCCTGATGCATATTATGATTTTGATCTCTCGACTCAAAAAATTGCGATTTATATTCCCCAGAAATTTGTTGTA
GATCGACCAGCGGGTTACATTGATCCTGCATTATTTGATTCGGGCATTAACTCAGCGTTCATTGGTTATAATGCAAACTT
TAACCAAAATGATCAGGAAGACAGTAAATATTTAGCATTAACTGCAGGATTAAACTTAAAAGGCTGGTATTTCCGTCATG
CAGGAAATTTTGACTCGAAGGATTCAGGTTTAGGGAAATATCGTTCATATCAAAATGTACTTTATCGTGATATTACCGCG
ATAAATGCGCGTATAAGTGCGGGACAATTTAATACATCTAGTCTACAAACTGAAAGTTTGCCAATTGTAGGGATACAACT
TGCTTCAGATTTGTCTATGTTGCCTTGGTCAATGCGTAGCTATGCACCAGTCATTGAAAATGTGGCCAATACCAATGCCT
TGGTTCGTGTTTTTCAAAATGGTCAAAAGATCTATGAGAGAACAGTTCCTGCAGGTCCATTTCGTATTACTGATTTAACT
TCGTTTGCTTCAGGTGTAATGACACTAGAAATTACAGAGAATGGTGGGGAGAAGAAAACCTATATCATTCCTGTGCAAAA
TAATATGAATTTGCTTAAGCCAGGACAGAAAACTTTCAGTATAGCGCTTGGAAATTATAAAACGATTGAAAAACTGACCG
ATGATAGTGTATTACAAGCAAGTTATAATTATGGTTTAAATAATTATTTAACATTATTAAGTGGTATGAATCTCACTCAG
GATTATCAGGGTGGGATGCTGGGAGCAGGCTTAAATACTGTTTTAGGCGGAATAAGTATAAAAGCAAATGTTAGTCAGGC
GACATTGCGAGATCAGGACTACAGTGGTCAAAAAATTGCGCTGGATTATTCTTATTATTTACCTGCATACAAAATAAATT
TTTATGCTAATGCACAGACTCAAACACAACATTATCTATCAGTATTAAATTTACTTTCTTATAAAAATTATGATTATTTA
AATACAGATGAGTTAAATAGTTTATCTTTGACGGCTGATTTAAGAAATCAGGTCAATTTTAGTTTAAGTAAAAGCTTCGA
TAATCCGAAGATGGGCGCATTAAGTTTAGGGTTTTTAGTAAGTGACTATTGGAATAGCGATAATAATCGATATCAATATA
ACTTGAGTTATGGAAATTCATGGAAACGCATGTCTTATTCGATTGGATTCTCTCAAACTAATTATAGAGAGAATACTTTT
GATAAGGATCGCAGTATTTATTTCAGTGTTTCTTTACCTTTAGATCTTCGTAAGTCTAACATTAACCTTAACTCAACTTA
TCAGCATAGTGAACAACAAGGGATTAGTAGCGATAACTTTGGCGCTTATTTGTCTGGTACGGCGGGTTCTAATAACAATA
TTAACTTTGGTTTAGGTGCAACTTCCAATCGTTATGATGGTAGCACCAATAATTCATACAATGCCAATGTAAATTATTTA
CTGCCTCAGGTGAATTTAGGTGCAACGGTTTATCATAGTAATCAAGATACCCAATATTCACTTTCAGCACAGGGTGCAAT
TGTAGCGCATCGCTATGGTATTACAACCACCAACACGGCAGCAGATACTTATACTATTGTTCATGTCGATCATGGTGCTG
GTGCTAGTGTTGAAAATGCATGGGGTATAAAACTTGATCGGTGGGGTAATGCAATTTATCCAAATGCTTCCGCCTATTCG
ATTAATACGCTCTCGATTAATCCAGATCAATTACCGCCTGAAATTACGTTAGATGGTAACCAAACTCGGGTGATTCCGCG
TATGTACAGTTCAACCCTTGCGACTTTCAAAGCGAATCAACAAAGCAATATTTTAATGCGTATTGATAGTAAAAACACAC
AACAGTTTCCTATGGGAAGTCGTATTGAAACATCAAGTGGTGAGCTAATTGGTTTGATGGGTCAGTCGAATCAATCCTTA
CTTACCCATGATATTCGTGATTTGAAAGAGCCTTTAAAAGTCGTGTGGGGAGATCAGGTTAAACAAAGCTGTAATATTCC
GCTAACAGAATTTAGTTCAGTGGTGAAGAAGAAAAACAGTCAATTAGATATTATTAATGTGGAGTGCCATTAA

Upstream 100 bases:

>100_bases
GTTTAAGCCTGATCAAATGAACTATACAATTATTAATGATTTAGGCGGCAACCAGACTTTTGAGATGAAATAAAGAAACA
CTCATTGAGTATTTAACGGT

Downstream 100 bases:

>100_bases
ATGTATAAGAAAATAGCGCTAGTCTTGATGTGTCTATTGGCACTTGTCTCCCAAAGTCATGCAGTCTGTACTACTAGAAC
AAACCCTGTTAATTTTACTG

Product: fimbrial usher protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 850; Mature: 850

Protein sequence:

>850_residues
MKIRYSSSFLLLILLVSKSYAASESDISGRNPEKILAQENKNVLTFSSASLFGGQSQSVDLSIFRNANYVAEGTYIVDTA
VNERSIGELKVLFKHLDANSTAVLCIDADILKRLDLQPHYLASLAKKDCLTIKDINPDAYYDFDLSTQKIAIYIPQKFVV
DRPAGYIDPALFDSGINSAFIGYNANFNQNDQEDSKYLALTAGLNLKGWYFRHAGNFDSKDSGLGKYRSYQNVLYRDITA
INARISAGQFNTSSLQTESLPIVGIQLASDLSMLPWSMRSYAPVIENVANTNALVRVFQNGQKIYERTVPAGPFRITDLT
SFASGVMTLEITENGGEKKTYIIPVQNNMNLLKPGQKTFSIALGNYKTIEKLTDDSVLQASYNYGLNNYLTLLSGMNLTQ
DYQGGMLGAGLNTVLGGISIKANVSQATLRDQDYSGQKIALDYSYYLPAYKINFYANAQTQTQHYLSVLNLLSYKNYDYL
NTDELNSLSLTADLRNQVNFSLSKSFDNPKMGALSLGFLVSDYWNSDNNRYQYNLSYGNSWKRMSYSIGFSQTNYRENTF
DKDRSIYFSVSLPLDLRKSNINLNSTYQHSEQQGISSDNFGAYLSGTAGSNNNINFGLGATSNRYDGSTNNSYNANVNYL
LPQVNLGATVYHSNQDTQYSLSAQGAIVAHRYGITTTNTAADTYTIVHVDHGAGASVENAWGIKLDRWGNAIYPNASAYS
INTLSINPDQLPPEITLDGNQTRVIPRMYSSTLATFKANQQSNILMRIDSKNTQQFPMGSRIETSSGELIGLMGQSNQSL
LTHDIRDLKEPLKVVWGDQVKQSCNIPLTEFSSVVKKKNSQLDIINVECH

Sequences:

>Translated_850_residues
MKIRYSSSFLLLILLVSKSYAASESDISGRNPEKILAQENKNVLTFSSASLFGGQSQSVDLSIFRNANYVAEGTYIVDTA
VNERSIGELKVLFKHLDANSTAVLCIDADILKRLDLQPHYLASLAKKDCLTIKDINPDAYYDFDLSTQKIAIYIPQKFVV
DRPAGYIDPALFDSGINSAFIGYNANFNQNDQEDSKYLALTAGLNLKGWYFRHAGNFDSKDSGLGKYRSYQNVLYRDITA
INARISAGQFNTSSLQTESLPIVGIQLASDLSMLPWSMRSYAPVIENVANTNALVRVFQNGQKIYERTVPAGPFRITDLT
SFASGVMTLEITENGGEKKTYIIPVQNNMNLLKPGQKTFSIALGNYKTIEKLTDDSVLQASYNYGLNNYLTLLSGMNLTQ
DYQGGMLGAGLNTVLGGISIKANVSQATLRDQDYSGQKIALDYSYYLPAYKINFYANAQTQTQHYLSVLNLLSYKNYDYL
NTDELNSLSLTADLRNQVNFSLSKSFDNPKMGALSLGFLVSDYWNSDNNRYQYNLSYGNSWKRMSYSIGFSQTNYRENTF
DKDRSIYFSVSLPLDLRKSNINLNSTYQHSEQQGISSDNFGAYLSGTAGSNNNINFGLGATSNRYDGSTNNSYNANVNYL
LPQVNLGATVYHSNQDTQYSLSAQGAIVAHRYGITTTNTAADTYTIVHVDHGAGASVENAWGIKLDRWGNAIYPNASAYS
INTLSINPDQLPPEITLDGNQTRVIPRMYSSTLATFKANQQSNILMRIDSKNTQQFPMGSRIETSSGELIGLMGQSNQSL
LTHDIRDLKEPLKVVWGDQVKQSCNIPLTEFSSVVKKKNSQLDIINVECH
>Mature_850_residues
MKIRYSSSFLLLILLVSKSYAASESDISGRNPEKILAQENKNVLTFSSASLFGGQSQSVDLSIFRNANYVAEGTYIVDTA
VNERSIGELKVLFKHLDANSTAVLCIDADILKRLDLQPHYLASLAKKDCLTIKDINPDAYYDFDLSTQKIAIYIPQKFVV
DRPAGYIDPALFDSGINSAFIGYNANFNQNDQEDSKYLALTAGLNLKGWYFRHAGNFDSKDSGLGKYRSYQNVLYRDITA
INARISAGQFNTSSLQTESLPIVGIQLASDLSMLPWSMRSYAPVIENVANTNALVRVFQNGQKIYERTVPAGPFRITDLT
SFASGVMTLEITENGGEKKTYIIPVQNNMNLLKPGQKTFSIALGNYKTIEKLTDDSVLQASYNYGLNNYLTLLSGMNLTQ
DYQGGMLGAGLNTVLGGISIKANVSQATLRDQDYSGQKIALDYSYYLPAYKINFYANAQTQTQHYLSVLNLLSYKNYDYL
NTDELNSLSLTADLRNQVNFSLSKSFDNPKMGALSLGFLVSDYWNSDNNRYQYNLSYGNSWKRMSYSIGFSQTNYRENTF
DKDRSIYFSVSLPLDLRKSNINLNSTYQHSEQQGISSDNFGAYLSGTAGSNNNINFGLGATSNRYDGSTNNSYNANVNYL
LPQVNLGATVYHSNQDTQYSLSAQGAIVAHRYGITTTNTAADTYTIVHVDHGAGASVENAWGIKLDRWGNAIYPNASAYS
INTLSINPDQLPPEITLDGNQTRVIPRMYSSTLATFKANQQSNILMRIDSKNTQQFPMGSRIETSSGELIGLMGQSNQSL
LTHDIRDLKEPLKVVWGDQVKQSCNIPLTEFSSVVKKKNSQLDIINVECH

Specific function: Essential for piliation [H]

COG id: COG3188

COG function: function code NU; P pilus assembly protein, porin PapC

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fimbrial export usher family [H]

Homologues:

Organism=Escherichia coli, GI1786332, Length=843, Percent_Identity=28.5883748517201, Blast_Score=301, Evalue=2e-82,
Organism=Escherichia coli, GI1788427, Length=840, Percent_Identity=26.7857142857143, Blast_Score=270, Evalue=3e-73,
Organism=Escherichia coli, GI1789533, Length=819, Percent_Identity=25.8852258852259, Blast_Score=240, Evalue=3e-64,
Organism=Escherichia coli, GI1790772, Length=833, Percent_Identity=25.2100840336134, Blast_Score=233, Evalue=5e-62,
Organism=Escherichia coli, GI1786744, Length=815, Percent_Identity=25.1533742331288, Blast_Score=222, Evalue=9e-59,
Organism=Escherichia coli, GI1787172, Length=840, Percent_Identity=24.8809523809524, Blast_Score=215, Evalue=1e-56,
Organism=Escherichia coli, GI87081778, Length=819, Percent_Identity=24.9084249084249, Blast_Score=189, Evalue=4e-49,
Organism=Escherichia coli, GI1789610, Length=801, Percent_Identity=23.5955056179775, Blast_Score=114, Evalue=3e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000015
- InterPro:   IPR018030 [H]

Pfam domain/function: PF00577 Usher [H]

EC number: NA

Molecular weight: Translated: 94375; Mature: 94375

Theoretical pI: Translated: 6.75; Mature: 6.75

Prosite motif: PS01151 FIMBRIAL_USHER

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIRYSSSFLLLILLVSKSYAASESDISGRNPEKILAQENKNVLTFSSASLFGGQSQSVD
CEEEECCCCEEEEEEHHCCCCCCCCCCCCCCHHHHHHCCCCCEEEEECCCCCCCCCCCEE
LSIFRNANYVAEGTYIVDTAVNERSIGELKVLFKHLDANSTAVLCIDADILKRLDLQPHY
EEEEECCCEEECCCEEEEECCCCCCHHHHHHHHHHCCCCCEEEEEEEHHHHHHCCCCHHH
LASLAKKDCLTIKDINPDAYYDFDLSTQKIAIYIPQKFVVDRPAGYIDPALFDSGINSAF
HHHHHHCCCEEEEECCCCCEEEECCCCCEEEEEECCEEEEECCCCCCCHHHHCCCCCCEE
IGYNANFNQNDQEDSKYLALTAGLNLKGWYFRHAGNFDSKDSGLGKYRSYQNVLYRDITA
EEECCCCCCCCCCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHEE
INARISAGQFNTSSLQTESLPIVGIQLASDLSMLPWSMRSYAPVIENVANTNALVRVFQN
EEEEEECCCCCCCCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHC
GQKIYERTVPAGPFRITDLTSFASGVMTLEITENGGEKKTYIIPVQNNMNLLKPGQKTFS
CHHHHHHCCCCCCEEEEEHHHHHCCEEEEEEECCCCCEEEEEEEECCCCCEECCCCEEEE
IALGNYKTIEKLTDDSVLQASYNYGLNNYLTLLSGMNLTQDYQGGMLGAGLNTVLGGISI
EEECCCHHHHHCCCCCEEEEECCCCCHHHHHHHCCCCCCCCCCCCEECCCHHHHHCCEEE
KANVSQATLRDQDYSGQKIALDYSYYLPAYKINFYANAQTQTQHYLSVLNLLSYKNYDYL
EECCCHHEECCCCCCCCEEEEEEEEECCEEEEEEEECCCHHHHHHHHHHHHHHCCCCCCC
NTDELNSLSLTADLRNQVNFSLSKSFDNPKMGALSLGFLVSDYWNSDNNRYQYNLSYGNS
CCCCCCCEEEEEEHHHCCCEEEECCCCCCCCCEEEEEEHEEHHCCCCCCEEEEEECCCCC
WKRMSYSIGFSQTNYRENTFDKDRSIYFSVSLPLDLRKSNINLNSTYQHSEQQGISSDNF
CEEEEEEECCCCCCCCCCCCCCCCEEEEEEECCEEEECCCCCCCCCCCCHHHCCCCCCCC
GAYLSGTAGSNNNINFGLGATSNRYDGSTNNSYNANVNYLLPQVNLGATVYHSNQDTQYS
CEEEECCCCCCCCEEEEECCCCCCCCCCCCCCCCCEEEEEEEECCCCEEEEECCCCCEEE
LSAQGAIVAHRYGITTTNTAADTYTIVHVDHGAGASVENAWGIKLDRWGNAIYPNASAYS
EECCCEEEEEEECCCCCCCCCCEEEEEEEECCCCCCCCCCCCEEEECCCCEECCCCCEEE
INTLSINPDQLPPEITLDGNQTRVIPRMYSSTLATFKANQQSNILMRIDSKNTQQFPMGS
EEEEEECCCCCCCEEEECCCCEEEEHHHHHHHHHEEECCCCCCEEEEEECCCCCCCCCCC
RIETSSGELIGLMGQSNQSLLTHDIRDLKEPLKVVWGDQVKQSCNIPLTEFSSVVKKKNS
EEECCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCHHHHHHCCCCHHHHHHHHHCCCC
QLDIINVECH
CEEEEEEEEC
>Mature Secondary Structure
MKIRYSSSFLLLILLVSKSYAASESDISGRNPEKILAQENKNVLTFSSASLFGGQSQSVD
CEEEECCCCEEEEEEHHCCCCCCCCCCCCCCHHHHHHCCCCCEEEEECCCCCCCCCCCEE
LSIFRNANYVAEGTYIVDTAVNERSIGELKVLFKHLDANSTAVLCIDADILKRLDLQPHY
EEEEECCCEEECCCEEEEECCCCCCHHHHHHHHHHCCCCCEEEEEEEHHHHHHCCCCHHH
LASLAKKDCLTIKDINPDAYYDFDLSTQKIAIYIPQKFVVDRPAGYIDPALFDSGINSAF
HHHHHHCCCEEEEECCCCCEEEECCCCCEEEEEECCEEEEECCCCCCCHHHHCCCCCCEE
IGYNANFNQNDQEDSKYLALTAGLNLKGWYFRHAGNFDSKDSGLGKYRSYQNVLYRDITA
EEECCCCCCCCCCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHEE
INARISAGQFNTSSLQTESLPIVGIQLASDLSMLPWSMRSYAPVIENVANTNALVRVFQN
EEEEEECCCCCCCCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHC
GQKIYERTVPAGPFRITDLTSFASGVMTLEITENGGEKKTYIIPVQNNMNLLKPGQKTFS
CHHHHHHCCCCCCEEEEEHHHHHCCEEEEEEECCCCCEEEEEEEECCCCCEECCCCEEEE
IALGNYKTIEKLTDDSVLQASYNYGLNNYLTLLSGMNLTQDYQGGMLGAGLNTVLGGISI
EEECCCHHHHHCCCCCEEEEECCCCCHHHHHHHCCCCCCCCCCCCEECCCHHHHHCCEEE
KANVSQATLRDQDYSGQKIALDYSYYLPAYKINFYANAQTQTQHYLSVLNLLSYKNYDYL
EECCCHHEECCCCCCCCEEEEEEEEECCEEEEEEEECCCHHHHHHHHHHHHHHCCCCCCC
NTDELNSLSLTADLRNQVNFSLSKSFDNPKMGALSLGFLVSDYWNSDNNRYQYNLSYGNS
CCCCCCCEEEEEEHHHCCCEEEECCCCCCCCCEEEEEEHEEHHCCCCCCEEEEEECCCCC
WKRMSYSIGFSQTNYRENTFDKDRSIYFSVSLPLDLRKSNINLNSTYQHSEQQGISSDNF
CEEEEEEECCCCCCCCCCCCCCCCEEEEEEECCEEEECCCCCCCCCCCCHHHCCCCCCCC
GAYLSGTAGSNNNINFGLGATSNRYDGSTNNSYNANVNYLLPQVNLGATVYHSNQDTQYS
CEEEECCCCCCCCEEEEECCCCCCCCCCCCCCCCCEEEEEEEECCCCEEEEECCCCCEEE
LSAQGAIVAHRYGITTTNTAADTYTIVHVDHGAGASVENAWGIKLDRWGNAIYPNASAYS
EECCCEEEEEEECCCCCCCCCCEEEEEEEECCCCCCCCCCCCEEEECCCCEECCCCCEEE
INTLSINPDQLPPEITLDGNQTRVIPRMYSSTLATFKANQQSNILMRIDSKNTQQFPMGS
EEEEEECCCCCCCEEEECCCCEEEEHHHHHHHHHEEECCCCCCEEEEEECCCCCCCCCCC
RIETSSGELIGLMGQSNQSLLTHDIRDLKEPLKVVWGDQVKQSCNIPLTEFSSVVKKKNS
EEECCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCHHHHHHCCCCHHHHHHHHHCCCC
QLDIINVECH
CEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7905461 [H]