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The map label for this gene is rbfA

Identifier: 50083630

GI number: 50083630

Start: 363575

End: 363976

Strand: Direct

Name: rbfA

Synonym: ACIAD0370

Alternate gene names: 50083630

Gene position: 363575-363976 (Clockwise)

Preceding gene: 50083629

Following gene: 50083646

Centisome position: 10.1

GC content: 44.53

Gene sequence:

>402_bases
ATGGCGGGTAGCCAACGCTTAAAGCGAATGGCGGATTCAGTACAACGTGAGTTGTCTGAACTGATCCGTCAGGAGCTCAA
AGATCCTCGCTTAGGGGGTCTGGTGACCATCTCTGCAGTGAAAGTCAGTGCAGACATGGGATATGCTGAAGTTTATGTCA
CTGTGATGGGGCGTGAGCTAGGTGATGAACAAAGTGAAGCAGCAAATAAAGAAACTTTAGATGTCTTAAATAAAGCGTCT
GGTTTCTTGCGTCATGAACTAAGCCGTCGCATTAAAACTCGTATTACGCCACGTTTGCGTTTTCACTACGATAAAACCAA
TGCCTATGGCAACTATATGTTTGGTTTGATTGAAAAGGCAGTGCAAGATCTGCCAGAGCAGTCATCTGAAGATAAGTCTT
AA

Upstream 100 bases:

>100_bases
CGGGTATGGAATGTGGTCTTGCAGTAAAAGGCTATAAAGACATCAAAGCGAAAGACAAGATCGAAGTGTATGATGTTCAA
TTGATTAAACGGAGTCTTTA

Downstream 100 bases:

>100_bases
GCCATATAAAAAGCCACCTGCGGGTGGCTTTTTATATGTAGTCATTTATTGATCTGTTGGTGGATCTGAACGTTGATGGC
TTTGATTCAGACTACGACGG

Product: ribosome-binding factor A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 133; Mature: 132

Protein sequence:

>133_residues
MAGSQRLKRMADSVQRELSELIRQELKDPRLGGLVTISAVKVSADMGYAEVYVTVMGRELGDEQSEAANKETLDVLNKAS
GFLRHELSRRIKTRITPRLRFHYDKTNAYGNYMFGLIEKAVQDLPEQSSEDKS

Sequences:

>Translated_133_residues
MAGSQRLKRMADSVQRELSELIRQELKDPRLGGLVTISAVKVSADMGYAEVYVTVMGRELGDEQSEAANKETLDVLNKAS
GFLRHELSRRIKTRITPRLRFHYDKTNAYGNYMFGLIEKAVQDLPEQSSEDKS
>Mature_132_residues
AGSQRLKRMADSVQRELSELIRQELKDPRLGGLVTISAVKVSADMGYAEVYVTVMGRELGDEQSEAANKETLDVLNKASG
FLRHELSRRIKTRITPRLRFHYDKTNAYGNYMFGLIEKAVQDLPEQSSEDKS

Specific function: Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Essential for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA

COG id: COG0858

COG function: function code J; Ribosome-binding factor A

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rbfA family

Homologues:

Organism=Escherichia coli, GI1789558, Length=132, Percent_Identity=36.3636363636364, Blast_Score=87, Evalue=4e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RBFA_ACIAD (Q6FF39)

Other databases:

- EMBL:   CR543861
- RefSeq:   YP_045140.1
- ProteinModelPortal:   Q6FF39
- SMR:   Q6FF39
- STRING:   Q6FF39
- GeneID:   2879474
- GenomeReviews:   CR543861_GR
- KEGG:   aci:ACIAD0370
- NMPDR:   fig|62977.3.peg.884
- eggNOG:   COG0858
- HOGENOM:   HBG751055
- OMA:   SIEYGNR
- PhylomeDB:   Q6FF39
- ProtClustDB:   PRK13816
- BioCyc:   ASP62977:ACIAD0370-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00003
- InterPro:   IPR015946
- InterPro:   IPR000238
- Gene3D:   G3DSA:3.30.300.20
- ProDom:   PD007327
- TIGRFAMs:   TIGR00082

Pfam domain/function: PF02033 RBFA; SSF89919 Rib_bd_factA

EC number: NA

Molecular weight: Translated: 15051; Mature: 14920

Theoretical pI: Translated: 8.85; Mature: 8.85

Prosite motif: PS01319 RBFA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAGSQRLKRMADSVQRELSELIRQELKDPRLGGLVTISAVKVSADMGYAEVYVTVMGREL
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHCCCCHHHHHHHHHHHHH
GDEQSEAANKETLDVLNKASGFLRHELSRRIKTRITPRLRFHYDKTNAYGNYMFGLIEKA
CCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHEEEECCCCCCHHHHHHHHHHH
VQDLPEQSSEDKS
HHHCCCCCCCCCC
>Mature Secondary Structure 
AGSQRLKRMADSVQRELSELIRQELKDPRLGGLVTISAVKVSADMGYAEVYVTVMGREL
CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHCCCCHHHHHHHHHHHHH
GDEQSEAANKETLDVLNKASGFLRHELSRRIKTRITPRLRFHYDKTNAYGNYMFGLIEKA
CCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHEEEECCCCCCHHHHHHHHHHH
VQDLPEQSSEDKS
HHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA