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The map label for this gene is rhaS [H]

Identifier: 50083445

GI number: 50083445

Start: 158189

End: 159055

Strand: Reverse

Name: rhaS [H]

Synonym: ACIAD0160

Alternate gene names: 50083445

Gene position: 159055-158189 (Counterclockwise)

Preceding gene: 50083448

Following gene: 50083438

Centisome position: 4.42

GC content: 44.29

Gene sequence:

>867_bases
ATGACCTATCAAACACTTCAACAACTGCAACGGCATAAAACTCAGCTAATTGATACAGTACAATTGGGTTCTGGCATGCA
GATTGCCGCATGGCGAAATCAGCAGGATCTGGTGAGTGTCTGTAGTAATCATCATACGCTGAGTTTGTACATTCAAGGTG
GCTACGAGAGCTATCGTAAAACGCCGCATGGCTGGCGTAATGGTGGTGCACCTGATCGTTTTTGTCTGATGCCCGAAGCA
CATGAATCCGTTTGGGATATTCGGGATCAACTCAGTTTTGTGCATCTGTATTATACAGATCAGCATCTAAGAACACTGGC
CTGTAAAATCTGGGATAAAGAACCTGCCCAAATTCAATTGCAAGAACAGAGTTTTGTTTCAGACACCAAAGTCAGTAGCG
TTTATCGACATTTCTTACTCGGATGCGACTGGCGTGACTCAAGTAACCACTTACAATTAAGCAGTGCAGCAGACTTGTTA
CTGAATCATTTGCTCCAGTCTTATAGCAATGTGCAATGGCAACTCCCACGTGTCAGAGGCGGACTTGCTCCTTTCTTACT
CAAGCGTGTTAAAGCCTGGATAAATGAGCACTTACACACAGCCATCACCATTGCTGATTTGGCAGCACAAACCCAACTTA
GCGAATATCATTTTGCACACATGTTCAAGCAATCGACAGGTGTTTCACCGCATCAATATGTTTTACAGCAACGACTTGAA
CGGGCACACCATCTGATTTTACATCATTCATGCGATCTCACCCAAATCGCACTGCAATGTGGCTTTAGCTCTGCCAGTCA
TTTTAGCACCCGTTTCAAACATCATTACGGCTATTCACCTTCTGTGTTACGCCGACAAGCTTACTAA

Upstream 100 bases:

>100_bases
TAATCTTGCGCTTTTTTGTGGTGATTTTTGATTACTATTTTTAAAAACTCGCTACACTGTAAATACGTGCTTAAGTCCAC
ATTCATTCTTACTTTTAGCA

Downstream 100 bases:

>100_bases
ATTTATTCAATGCCTTTTTGTTTGGCCTGCTGATAGGCGGGACGTACCTGTATTCGCTTCAAAAATGCCTGTATGTGCGG
ATATTGTCCTGTCGTTCGGG

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: L-rhamnose operon regulatory protein rhaS [H]

Number of amino acids: Translated: 288; Mature: 287

Protein sequence:

>288_residues
MTYQTLQQLQRHKTQLIDTVQLGSGMQIAAWRNQQDLVSVCSNHHTLSLYIQGGYESYRKTPHGWRNGGAPDRFCLMPEA
HESVWDIRDQLSFVHLYYTDQHLRTLACKIWDKEPAQIQLQEQSFVSDTKVSSVYRHFLLGCDWRDSSNHLQLSSAADLL
LNHLLQSYSNVQWQLPRVRGGLAPFLLKRVKAWINEHLHTAITIADLAAQTQLSEYHFAHMFKQSTGVSPHQYVLQQRLE
RAHHLILHHSCDLTQIALQCGFSSASHFSTRFKHHYGYSPSVLRRQAY

Sequences:

>Translated_288_residues
MTYQTLQQLQRHKTQLIDTVQLGSGMQIAAWRNQQDLVSVCSNHHTLSLYIQGGYESYRKTPHGWRNGGAPDRFCLMPEA
HESVWDIRDQLSFVHLYYTDQHLRTLACKIWDKEPAQIQLQEQSFVSDTKVSSVYRHFLLGCDWRDSSNHLQLSSAADLL
LNHLLQSYSNVQWQLPRVRGGLAPFLLKRVKAWINEHLHTAITIADLAAQTQLSEYHFAHMFKQSTGVSPHQYVLQQRLE
RAHHLILHHSCDLTQIALQCGFSSASHFSTRFKHHYGYSPSVLRRQAY
>Mature_287_residues
TYQTLQQLQRHKTQLIDTVQLGSGMQIAAWRNQQDLVSVCSNHHTLSLYIQGGYESYRKTPHGWRNGGAPDRFCLMPEAH
ESVWDIRDQLSFVHLYYTDQHLRTLACKIWDKEPAQIQLQEQSFVSDTKVSSVYRHFLLGCDWRDSSNHLQLSSAADLLL
NHLLQSYSNVQWQLPRVRGGLAPFLLKRVKAWINEHLHTAITIADLAAQTQLSEYHFAHMFKQSTGVSPHQYVLQQRLER
AHHLILHHSCDLTQIALQCGFSSASHFSTRFKHHYGYSPSVLRRQAY

Specific function: Activates expression of the rhaBAD and rhaT operons [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 HTH araC/xylS-type DNA-binding domains [H]

Homologues:

Organism=Escherichia coli, GI1790339, Length=98, Percent_Identity=35.7142857142857, Blast_Score=71, Evalue=6e-14,
Organism=Escherichia coli, GI87082197, Length=96, Percent_Identity=34.375, Blast_Score=67, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060 [H]

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 33371; Mature: 33240

Theoretical pI: Translated: 8.76; Mature: 8.76

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTYQTLQQLQRHKTQLIDTVQLGSGMQIAAWRNQQDLVSVCSNHHTLSLYIQGGYESYRK
CCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHCCCCEEEEEEECCHHHHCC
TPHGWRNGGAPDRFCLMPEAHESVWDIRDQLSFVHLYYTDQHLRTLACKIWDKEPAQIQL
CCCCCCCCCCCCCEEECCHHHHHHHHHHHHHEEEEEEEEHHHHHHHHHHHCCCCCCEEEE
QEQSFVSDTKVSSVYRHFLLGCDWRDSSNHLQLSSAADLLLNHLLQSYSNVQWQLPRVRG
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEHHHHHHHHHHHHHHHHCCCEEECCHHHC
GLAPFLLKRVKAWINEHLHTAITIADLAAQTQLSEYHFAHMFKQSTGVSPHQYVLQQRLE
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
RAHHLILHHSCDLTQIALQCGFSSASHFSTRFKHHYGYSPSVLRRQAY
HHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHCCC
>Mature Secondary Structure 
TYQTLQQLQRHKTQLIDTVQLGSGMQIAAWRNQQDLVSVCSNHHTLSLYIQGGYESYRK
CHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHCCCCEEEEEEECCHHHHCC
TPHGWRNGGAPDRFCLMPEAHESVWDIRDQLSFVHLYYTDQHLRTLACKIWDKEPAQIQL
CCCCCCCCCCCCCEEECCHHHHHHHHHHHHHEEEEEEEEHHHHHHHHHHHCCCCCCEEEE
QEQSFVSDTKVSSVYRHFLLGCDWRDSSNHLQLSSAADLLLNHLLQSYSNVQWQLPRVRG
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEHHHHHHHHHHHHHHHHCCCEEECCHHHC
GLAPFLLKRVKAWINEHLHTAITIADLAAQTQLSEYHFAHMFKQSTGVSPHQYVLQQRLE
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
RAHHLILHHSCDLTQIALQCGFSSASHFSTRFKHHYGYSPSVLRRQAY
HHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA