BacMap

Definition	Acinetobacter sp. ADP1 chromosome, complete genome.
Accession	NC_005966
Length	3,598,621

Click here to switch to the map view.

The map label for this gene is yciK [H]

Identifier: 50083336

GI number: 50083336

Start: 47056

End: 47802

Strand: Reverse

Name: yciK [H]

Synonym: ACIAD0042

Alternate gene names: 50083336

Gene position: 47802-47056 (Counterclockwise)

Preceding gene: 50083337

Following gene: 50083335

Centisome position: 1.33

GC content: 46.99

Gene sequence:

>747_bases
ATGAAATATTCAGAATATCAACCTCGTACCGACTTATTAAAAGGCCGTATTATTTTAATTACAGGTGCAGGCGATGGAAT
TGGACGAGCAGCAGCCATGAGCTATGCGCTACACGGTGCGACTGTTGTTCTGCATGGAAGAACCTTAAATAAACTTGAAG
TCATCTATGATGAAATCGAAAGCTTGGGTGCACCGCAGCCTGCGATCTTACCTTTACAGCTTTCCAGTGCATCGGACCGT
GACTATGAGCTGCTCTTCAATACACTGGAAGATCAGTTTGGGCGTCTGGACGGAATTTTGCACAATGCAGGTATCTTGGG
TGAACGTGTGCCCCTAGCGCATTACCCAGCCGATGTCTGGGATGATGTGATGGCTGTTAACCTGCGTGCGCCTTTTGTGC
TGACTCAGGCGCTGCTACCGTTACTTGAAAGGTCAGATAATGCCTCGGTTGTATTTGCAAGTTCTGGTGTAGGACGTGAA
GCACGTGCCTTATGGGGTGCATATTCGGTGTCCAAGGTGGCCATTGAGGCAGTGAGCAAAATTTTTGCCAGTGAGCATGT
CTATCCGAACATTCGCTTTAACTGCATTAATCCGGGTGCAACACGCACAGCCATGCGTGCCAAGGCTTATCCAGAAGAAG
ATCCTCTGACTTTACCAACAACTGAGTCGATTATGCCAGCCTATCTTTATCTAATGGGTGAAGATAGTTTGCATCTGAAT
GGCCAAAGTATTGATGCACAGGATTAA

Upstream 100 bases:

>100_bases
ACAGAAAATTTTGTCTCAACAGCTACACATTACGCCATTAAATCAGGATACTATGCTACAAACATCATAATAATGACTCG
ATTTTAAAGGAGGTTTTCCA

Downstream 100 bases:

>100_bases
AACTTTAAGCCGGTATAAGGCATCCTGCGGGATGCTTTTTTGCATGAGACCTTCATACTTTTGACGATCGTTTTTTAAAA
CCGAACAAAAGTCGAGACGA

Product: short chain dehydrogenase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 248; Mature: 248

Protein sequence:

>248_residues
MKYSEYQPRTDLLKGRIILITGAGDGIGRAAAMSYALHGATVVLHGRTLNKLEVIYDEIESLGAPQPAILPLQLSSASDR
DYELLFNTLEDQFGRLDGILHNAGILGERVPLAHYPADVWDDVMAVNLRAPFVLTQALLPLLERSDNASVVFASSGVGRE
ARALWGAYSVSKVAIEAVSKIFASEHVYPNIRFNCINPGATRTAMRAKAYPEEDPLTLPTTESIMPAYLYLMGEDSLHLN
GQSIDAQD

Sequences:

>Translated_248_residues
MKYSEYQPRTDLLKGRIILITGAGDGIGRAAAMSYALHGATVVLHGRTLNKLEVIYDEIESLGAPQPAILPLQLSSASDR
DYELLFNTLEDQFGRLDGILHNAGILGERVPLAHYPADVWDDVMAVNLRAPFVLTQALLPLLERSDNASVVFASSGVGRE
ARALWGAYSVSKVAIEAVSKIFASEHVYPNIRFNCINPGATRTAMRAKAYPEEDPLTLPTTESIMPAYLYLMGEDSLHLN
GQSIDAQD
>Mature_248_residues
MKYSEYQPRTDLLKGRIILITGAGDGIGRAAAMSYALHGATVVLHGRTLNKLEVIYDEIESLGAPQPAILPLQLSSASDR
DYELLFNTLEDQFGRLDGILHNAGILGERVPLAHYPADVWDDVMAVNLRAPFVLTQALLPLLERSDNASVVFASSGVGRE
ARALWGAYSVSKVAIEAVSKIFASEHVYPNIRFNCINPGATRTAMRAKAYPEEDPLTLPTTESIMPAYLYLMGEDSLHLN
GQSIDAQD

Specific function: Unknown

COG id: COG1028

COG function: function code IQR; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI32483357, Length=251, Percent_Identity=27.0916334661355, Blast_Score=86, Evalue=2e-17,
Organism=Homo sapiens, GI4504505, Length=236, Percent_Identity=30.0847457627119, Blast_Score=86, Evalue=5e-17,
Organism=Homo sapiens, GI5031737, Length=249, Percent_Identity=26.9076305220884, Blast_Score=82, Evalue=3e-16,
Organism=Homo sapiens, GI33667109, Length=198, Percent_Identity=29.2929292929293, Blast_Score=79, Evalue=3e-15,
Organism=Homo sapiens, GI15277342, Length=259, Percent_Identity=28.1853281853282, Blast_Score=77, Evalue=1e-14,
Organism=Homo sapiens, GI4557649, Length=210, Percent_Identity=31.4285714285714, Blast_Score=76, Evalue=2e-14,
Organism=Homo sapiens, GI209862901, Length=241, Percent_Identity=26.9709543568465, Blast_Score=76, Evalue=2e-14,
Organism=Homo sapiens, GI19923983, Length=241, Percent_Identity=26.9709543568465, Blast_Score=76, Evalue=2e-14,
Organism=Homo sapiens, GI19923817, Length=251, Percent_Identity=23.9043824701195, Blast_Score=76, Evalue=3e-14,
Organism=Homo sapiens, GI126723191, Length=201, Percent_Identity=28.3582089552239, Blast_Score=72, Evalue=3e-13,
Organism=Homo sapiens, GI109715829, Length=229, Percent_Identity=26.6375545851528, Blast_Score=70, Evalue=1e-12,
Organism=Homo sapiens, GI32455239, Length=222, Percent_Identity=29.7297297297297, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI5031765, Length=222, Percent_Identity=29.7297297297297, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI7705925, Length=244, Percent_Identity=27.4590163934426, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI20149619, Length=205, Percent_Identity=28.780487804878, Blast_Score=66, Evalue=3e-11,
Organism=Homo sapiens, GI66933014, Length=250, Percent_Identity=27.2, Blast_Score=66, Evalue=3e-11,
Organism=Homo sapiens, GI126723750, Length=255, Percent_Identity=25.4901960784314, Blast_Score=66, Evalue=4e-11,
Organism=Homo sapiens, GI119392083, Length=189, Percent_Identity=30.1587301587302, Blast_Score=65, Evalue=6e-11,
Organism=Escherichia coli, GI1787526, Length=242, Percent_Identity=51.6528925619835, Blast_Score=238, Evalue=2e-64,
Organism=Escherichia coli, GI1790717, Length=205, Percent_Identity=28.780487804878, Blast_Score=81, Evalue=7e-17,
Organism=Escherichia coli, GI1787335, Length=240, Percent_Identity=25.8333333333333, Blast_Score=77, Evalue=8e-16,
Organism=Escherichia coli, GI87082100, Length=219, Percent_Identity=30.5936073059361, Blast_Score=74, Evalue=8e-15,
Organism=Escherichia coli, GI1789378, Length=245, Percent_Identity=26.9387755102041, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI87082160, Length=253, Percent_Identity=26.4822134387352, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1789208, Length=243, Percent_Identity=23.8683127572016, Blast_Score=65, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI17562906, Length=196, Percent_Identity=31.1224489795918, Blast_Score=100, Evalue=9e-22,
Organism=Caenorhabditis elegans, GI17544670, Length=206, Percent_Identity=29.6116504854369, Blast_Score=93, Evalue=1e-19,
Organism=Caenorhabditis elegans, GI17562908, Length=197, Percent_Identity=31.9796954314721, Blast_Score=92, Evalue=3e-19,
Organism=Caenorhabditis elegans, GI17531453, Length=197, Percent_Identity=30.9644670050761, Blast_Score=90, Evalue=9e-19,
Organism=Caenorhabditis elegans, GI17560220, Length=204, Percent_Identity=29.4117647058824, Blast_Score=89, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI193204405, Length=204, Percent_Identity=28.921568627451, Blast_Score=86, Evalue=1e-17,
Organism=Caenorhabditis elegans, GI17560150, Length=204, Percent_Identity=28.4313725490196, Blast_Score=86, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI17559104, Length=223, Percent_Identity=27.8026905829596, Blast_Score=84, Evalue=5e-17,
Organism=Caenorhabditis elegans, GI17560676, Length=208, Percent_Identity=31.7307692307692, Blast_Score=83, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI71994604, Length=197, Percent_Identity=30.4568527918782, Blast_Score=83, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI17560332, Length=198, Percent_Identity=27.7777777777778, Blast_Score=80, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI71994600, Length=241, Percent_Identity=29.8755186721992, Blast_Score=77, Evalue=6e-15,
Organism=Caenorhabditis elegans, GI17562990, Length=204, Percent_Identity=27.9411764705882, Blast_Score=77, Evalue=9e-15,
Organism=Caenorhabditis elegans, GI17551412, Length=205, Percent_Identity=29.2682926829268, Blast_Score=77, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI17561402, Length=245, Percent_Identity=24.4897959183673, Blast_Score=75, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI17562904, Length=213, Percent_Identity=25.3521126760563, Blast_Score=74, Evalue=5e-14,
Organism=Caenorhabditis elegans, GI17562910, Length=197, Percent_Identity=27.4111675126904, Blast_Score=74, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17536651, Length=192, Percent_Identity=26.0416666666667, Blast_Score=72, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI17538480, Length=220, Percent_Identity=27.2727272727273, Blast_Score=71, Evalue=5e-13,
Organism=Caenorhabditis elegans, GI115534694, Length=238, Percent_Identity=26.0504201680672, Blast_Score=70, Evalue=9e-13,
Organism=Caenorhabditis elegans, GI17555612, Length=240, Percent_Identity=30.4166666666667, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17568967, Length=204, Percent_Identity=27.9411764705882, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17538486, Length=200, Percent_Identity=25.5, Blast_Score=69, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI72000259, Length=192, Percent_Identity=26.5625, Blast_Score=68, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI17565030, Length=196, Percent_Identity=25.5102040816327, Blast_Score=67, Evalue=7e-12,
Organism=Caenorhabditis elegans, GI17536025, Length=197, Percent_Identity=28.9340101522843, Blast_Score=67, Evalue=8e-12,
Organism=Caenorhabditis elegans, GI17555706, Length=255, Percent_Identity=25.4901960784314, Blast_Score=66, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17563726, Length=203, Percent_Identity=24.6305418719212, Blast_Score=65, Evalue=4e-11,
Organism=Saccharomyces cerevisiae, GI6322861, Length=235, Percent_Identity=27.6595744680851, Blast_Score=78, Evalue=2e-15,
Organism=Saccharomyces cerevisiae, GI6322227, Length=199, Percent_Identity=30.6532663316583, Blast_Score=73, Evalue=4e-14,
Organism=Saccharomyces cerevisiae, GI6323882, Length=203, Percent_Identity=28.0788177339901, Blast_Score=71, Evalue=2e-13,
Organism=Saccharomyces cerevisiae, GI6324126, Length=252, Percent_Identity=25, Blast_Score=71, Evalue=2e-13,
Organism=Drosophila melanogaster, GI21355319, Length=244, Percent_Identity=31.1475409836066, Blast_Score=113, Evalue=1e-25,
Organism=Drosophila melanogaster, GI24644339, Length=194, Percent_Identity=32.4742268041237, Blast_Score=105, Evalue=3e-23,
Organism=Drosophila melanogaster, GI23397609, Length=187, Percent_Identity=35.2941176470588, Blast_Score=93, Evalue=2e-19,
Organism=Drosophila melanogaster, GI21358495, Length=208, Percent_Identity=31.25, Blast_Score=87, Evalue=1e-17,
Organism=Drosophila melanogaster, GI28571526, Length=202, Percent_Identity=30.1980198019802, Blast_Score=85, Evalue=5e-17,
Organism=Drosophila melanogaster, GI24643142, Length=247, Percent_Identity=30.3643724696356, Blast_Score=84, Evalue=1e-16,
Organism=Drosophila melanogaster, GI24639444, Length=246, Percent_Identity=28.4552845528455, Blast_Score=83, Evalue=1e-16,
Organism=Drosophila melanogaster, GI21357041, Length=205, Percent_Identity=28.780487804878, Blast_Score=79, Evalue=4e-15,
Organism=Drosophila melanogaster, GI18859837, Length=209, Percent_Identity=28.2296650717703, Blast_Score=75, Evalue=3e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 27057; Mature: 27057

Theoretical pI: Translated: 4.81; Mature: 4.81

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKYSEYQPRTDLLKGRIILITGAGDGIGRAAAMSYALHGATVVLHGRTLNKLEVIYDEIE
CCCCCCCCHHHHHCCEEEEEECCCCCCHHHHHHHHHHCCEEEEEECCCCHHHHHHHHHHH
SLGAPQPAILPLQLSSASDRDYELLFNTLEDQFGRLDGILHNAGILGERVPLAHYPADVW
HCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHH
DDVMAVNLRAPFVLTQALLPLLERSDNASVVFASSGVGREARALWGAYSVSKVAIEAVSK
HHHEEEECCCCHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHH
IFASEHVYPNIRFNCINPGATRTAMRAKAYPEEDPLTLPTTESIMPAYLYLMGEDSLHLN
HHHHCCCCCCEEEEEECCCCCHHHHHHCCCCCCCCEECCCCHHHHHEEEEEECCCCEEEC
GQSIDAQD
CCCCCCCC
>Mature Secondary Structure
MKYSEYQPRTDLLKGRIILITGAGDGIGRAAAMSYALHGATVVLHGRTLNKLEVIYDEIE
CCCCCCCCHHHHHCCEEEEEECCCCCCHHHHHHHHHHCCEEEEEECCCCHHHHHHHHHHH
SLGAPQPAILPLQLSSASDRDYELLFNTLEDQFGRLDGILHNAGILGERVPLAHYPADVW
HCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHH
DDVMAVNLRAPFVLTQALLPLLERSDNASVVFASSGVGREARALWGAYSVSKVAIEAVSK
HHHEEEECCCCHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHH
IFASEHVYPNIRFNCINPGATRTAMRAKAYPEEDPLTLPTTESIMPAYLYLMGEDSLHLN
HHHHCCCCCCEEEEEECCCCCHHHHHHCCCCCCCCEECCCCHHHHHEEEEEECCCCEEEC
GQSIDAQD
CCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on the CH-OH group of donors; With NAD or NADP as acceptor [C]

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 1885549 [H]