Click here to switch to the map view.

The map label for this gene is recD

Identifier: 49481477

GI number: 49481477

Start: 4187265

End: 4189601

Strand: Reverse

Name: recD

Synonym: BT9727_4126

Alternate gene names: 49481477

Gene position: 4189601-4187265 (Counterclockwise)

Preceding gene: 49478625

Following gene: 49480664

Centisome position: 79.99

GC content: 38.3

Gene sequence:

>2337_bases
ATGGGAAATCAACATGCAATGGATTTGTTTGAGGAAGAAAAAAAGTTTATAAAAGCGCAAGTTCTTCATACCATTTTCCA
CAACGAAGAAAACCTCTATTCCGTTGTCAGTATGAAAGTCATTGAAACGAATGAAACGTACGACGAAAAAAAAGTGATGA
TAAACGGTCATTTTCCCCGCATGCATGAAGATGAAGTGTTTACGTTGACAGGACATTTTAAAGACCATCCGAAGTATGGG
AAACAATATTTAGTTGAAACGTTTAAGAAAGAATTGCCGCAAACAAAAGCAGGTATGGTGCAATATTTAGCGAGTGATCT
ATTTAAAGGGATAGGAAAACGCACAGCTGAAAAAATTGTGGACCATCTAGGGGAACATGCTATTTCTAAAATCATGGATG
ATCCTGAGGCTTTAAACGGTGTTGTTAACAAACAAAAAGCGCAAGAAATATATGAGACAATTGTTGAACATCAAGGATTA
GAGAAAGTAATGAGTTTTTTAAATGGTTACGGTTTTGGAACGAAGCTTTCTATTAAGATTTATCAGCAGTATAAAGAGAT
GACATTAGAAGTGATTCGTAATAACCCATATCAGCTTATTGAAGAAGTGGATGGGATTGGATTTGGAAGAGCGGATGATA
TCGGACGTGCGTTAGGAATATCGGGTAATCATGATGATCGTGTACGTGCGGGATGTTTTTATACGTTAGAGAATGTGTCA
TTACAACTTGGTCACGTTTATATGAGAAAAGATCAACTTGTAAGAGAAACGATGTCACTTTTAAATAATCAAGAAGGAAG
AGTGACAGAGGAAGACATTATAAGCTGTATTGAAATGATGCAAAGTGAAGGGAAAGTCATCATCGAAGAAGAGCGAGTAT
ATTTGGCATCGTTATTCTATTCTGAAAAAGGTGTTGTGAAGTCTATTCGCAGGCTCATGAATCAGGAAGAAACACCTTCA
TTTCCTGAAGCAGAAGTGTTAAAGACGTTAGGTGAAATTGAAGAACAATTGAACGTACAGTATGCGCCGCTTCAGCAAGA
AGCAATTCAAACGGCACTTCATAAACCGATGATGTTATTGACAGGTGGACCAGGAACAGGAAAAACAACAGTTATTAAAG
GAATTGTTGAAATGTATGCGTCACTTCACGGGCTATCGTTAAATCCGAATGAATATAGTGATGATAATCCATTTCCGATA
CTATTAACAGCTCCAACAGGAAGAGCAGCGAAGCGAATGAGTGAATCAACAGGGCTTCCAGCTTGCACAATTCACCGTTT
ACTTGGATGGACGCCAGAAGGGTCTTTCCAGCGTAATGAAACAGATCCGGTACAAGGGAAATTACTCATTATTGATGAAT
TTTCAATGGTTGATATTTGGCTTGCAAATCAGCTGTTTAAGTCATTGCCGACTAACATTCAAGTTATCGTTGTAGGCGAT
GAAGATCAATTACCATCTGTAGGACCTGGGCAAGTATTGAAAGATTTATTAAATGCAGGTGCAGTTCCAACAGTAAAGCT
TACTGAAATTTATCGTCAAGCGGAAGGTTCATCAGTGATTCAACTTGCCCATGCGATAAAAAATGGAACGCTCCCACCAG
ATTTAGCGCAAAATCAAAAAGATCGTTCATTTATCGGCTGCACAGGAGCTCAAATTGTTGAAGTTGTTAAGAAGGTTTGC
GAAAACGCTAAGACAAAAGGGTTTAGCGCAAGAGATGTACAAGTATTGGCCCCGATGTATCGTGGACCGGCTGGTATTAA
TGTACTAAACGAAGCGTTGCAAGAAGTGTTTAATCCGAAAAGAGAAAAGAGTAAAGAAATTGCTTACGGTGATGTTGTAT
ACCGAAGAGGCGATAAAGTTTTGCAACTCGTCAATCAGCCGGAGAGCCAAGTATTTAATGGTGATATCGGCGAAATTGTT
TCGGTGTTTTATGCGAAAGAAAACGTTGAGCAACAAGATATGATTATCGTTTCATTTGATGGAATTGAGGTAACATATAC
AAAACCAGATTTAAATCAAATTACACATGCTTATTGCTGTTCCATTCATAAATCGCAAGGCAGTGAGTTTCCCATTGTGA
TTATGCCGATAGTGAAAAGTTATAATCGTATGTTACGTCGTAATTTAATTTATACTGGTATTACAAGAAGTAAGAAGTTC
CTTATTATTTGCGGGGAGGAAGCTGCTTTTCAGTCTGGTGTAAATCGCCTTGATGATGCAATGCGTCAAACGACTTTAGC
TAGCCGCTTGCAAGAATCACAAGGAGAAGTACAGATGGTAACGGTTAATGGCGAAGAAATGGACGTGGAAAACATTTCAC
CGTATGATTTCATGTAA

Upstream 100 bases:

>100_bases
AATAAGAAAAATATAGTTTAATGGGTAGTTATCCCTCATCTAAAGAGGTGGGGGATGTACTGCTCATTAAAGTGAAACGA
AACCGGAAAGGAGAGGAAAG

Downstream 100 bases:

>100_bases
CAAGGTGAAATTATATAGTGAAACTTTCAAACGTATAACGTTGAAAGGCTCCAGCAATGTATAAATGAATGCAGTTTGGA
CATAATGGCGAATAGAATCC

Product: exodeoxyribonuclease V subunit alpha

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 778; Mature: 777

Protein sequence:

>778_residues
MGNQHAMDLFEEEKKFIKAQVLHTIFHNEENLYSVVSMKVIETNETYDEKKVMINGHFPRMHEDEVFTLTGHFKDHPKYG
KQYLVETFKKELPQTKAGMVQYLASDLFKGIGKRTAEKIVDHLGEHAISKIMDDPEALNGVVNKQKAQEIYETIVEHQGL
EKVMSFLNGYGFGTKLSIKIYQQYKEMTLEVIRNNPYQLIEEVDGIGFGRADDIGRALGISGNHDDRVRAGCFYTLENVS
LQLGHVYMRKDQLVRETMSLLNNQEGRVTEEDIISCIEMMQSEGKVIIEEERVYLASLFYSEKGVVKSIRRLMNQEETPS
FPEAEVLKTLGEIEEQLNVQYAPLQQEAIQTALHKPMMLLTGGPGTGKTTVIKGIVEMYASLHGLSLNPNEYSDDNPFPI
LLTAPTGRAAKRMSESTGLPACTIHRLLGWTPEGSFQRNETDPVQGKLLIIDEFSMVDIWLANQLFKSLPTNIQVIVVGD
EDQLPSVGPGQVLKDLLNAGAVPTVKLTEIYRQAEGSSVIQLAHAIKNGTLPPDLAQNQKDRSFIGCTGAQIVEVVKKVC
ENAKTKGFSARDVQVLAPMYRGPAGINVLNEALQEVFNPKREKSKEIAYGDVVYRRGDKVLQLVNQPESQVFNGDIGEIV
SVFYAKENVEQQDMIIVSFDGIEVTYTKPDLNQITHAYCCSIHKSQGSEFPIVIMPIVKSYNRMLRRNLIYTGITRSKKF
LIICGEEAAFQSGVNRLDDAMRQTTLASRLQESQGEVQMVTVNGEEMDVENISPYDFM

Sequences:

>Translated_778_residues
MGNQHAMDLFEEEKKFIKAQVLHTIFHNEENLYSVVSMKVIETNETYDEKKVMINGHFPRMHEDEVFTLTGHFKDHPKYG
KQYLVETFKKELPQTKAGMVQYLASDLFKGIGKRTAEKIVDHLGEHAISKIMDDPEALNGVVNKQKAQEIYETIVEHQGL
EKVMSFLNGYGFGTKLSIKIYQQYKEMTLEVIRNNPYQLIEEVDGIGFGRADDIGRALGISGNHDDRVRAGCFYTLENVS
LQLGHVYMRKDQLVRETMSLLNNQEGRVTEEDIISCIEMMQSEGKVIIEEERVYLASLFYSEKGVVKSIRRLMNQEETPS
FPEAEVLKTLGEIEEQLNVQYAPLQQEAIQTALHKPMMLLTGGPGTGKTTVIKGIVEMYASLHGLSLNPNEYSDDNPFPI
LLTAPTGRAAKRMSESTGLPACTIHRLLGWTPEGSFQRNETDPVQGKLLIIDEFSMVDIWLANQLFKSLPTNIQVIVVGD
EDQLPSVGPGQVLKDLLNAGAVPTVKLTEIYRQAEGSSVIQLAHAIKNGTLPPDLAQNQKDRSFIGCTGAQIVEVVKKVC
ENAKTKGFSARDVQVLAPMYRGPAGINVLNEALQEVFNPKREKSKEIAYGDVVYRRGDKVLQLVNQPESQVFNGDIGEIV
SVFYAKENVEQQDMIIVSFDGIEVTYTKPDLNQITHAYCCSIHKSQGSEFPIVIMPIVKSYNRMLRRNLIYTGITRSKKF
LIICGEEAAFQSGVNRLDDAMRQTTLASRLQESQGEVQMVTVNGEEMDVENISPYDFM
>Mature_777_residues
GNQHAMDLFEEEKKFIKAQVLHTIFHNEENLYSVVSMKVIETNETYDEKKVMINGHFPRMHEDEVFTLTGHFKDHPKYGK
QYLVETFKKELPQTKAGMVQYLASDLFKGIGKRTAEKIVDHLGEHAISKIMDDPEALNGVVNKQKAQEIYETIVEHQGLE
KVMSFLNGYGFGTKLSIKIYQQYKEMTLEVIRNNPYQLIEEVDGIGFGRADDIGRALGISGNHDDRVRAGCFYTLENVSL
QLGHVYMRKDQLVRETMSLLNNQEGRVTEEDIISCIEMMQSEGKVIIEEERVYLASLFYSEKGVVKSIRRLMNQEETPSF
PEAEVLKTLGEIEEQLNVQYAPLQQEAIQTALHKPMMLLTGGPGTGKTTVIKGIVEMYASLHGLSLNPNEYSDDNPFPIL
LTAPTGRAAKRMSESTGLPACTIHRLLGWTPEGSFQRNETDPVQGKLLIIDEFSMVDIWLANQLFKSLPTNIQVIVVGDE
DQLPSVGPGQVLKDLLNAGAVPTVKLTEIYRQAEGSSVIQLAHAIKNGTLPPDLAQNQKDRSFIGCTGAQIVEVVKKVCE
NAKTKGFSARDVQVLAPMYRGPAGINVLNEALQEVFNPKREKSKEIAYGDVVYRRGDKVLQLVNQPESQVFNGDIGEIVS
VFYAKENVEQQDMIIVSFDGIEVTYTKPDLNQITHAYCCSIHKSQGSEFPIVIMPIVKSYNRMLRRNLIYTGITRSKKFL
IICGEEAAFQSGVNRLDDAMRQTTLASRLQESQGEVQMVTVNGEEMDVENISPYDFM

Specific function: Exhibits Several Catalytic Activities, Including ATP-Dependent Exonuclease, ATP-Stimulated Endonuclease, ATP-Dependent Unwinding And DNA-Dependent ATPase Activities. Strand Cleavage Occurs 5' To 3' During The Unwinding Of Duplex DNA At Chi Sequences, Whi

COG id: COG0507

COG function: function code L; ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1789182, Length=529, Percent_Identity=25.1417769376182, Blast_Score=111, Evalue=2e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR006345 [H]

Pfam domain/function: NA

EC number: 3.1.11.5

Molecular weight: Translated: 87431; Mature: 87300

Theoretical pI: Translated: 5.20; Mature: 5.20

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGNQHAMDLFEEEKKFIKAQVLHTIFHNEENLYSVVSMKVIETNETYDEKKVMINGHFPR
CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHEEHHEEEEEECCCCCCCCEEEEECCCCC
MHEDEVFTLTGHFKDHPKYGKQYLVETFKKELPQTKAGMVQYLASDLFKGIGKRTAEKIV
CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
DHLGEHAISKIMDDPEALNGVVNKQKAQEIYETIVEHQGLEKVMSFLNGYGFGTKLSIKI
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCEEEHHH
YQQYKEMTLEVIRNNPYQLIEEVDGIGFGRADDIGRALGISGNHDDRVRAGCFYTLENVS
HHHHHHHHHHHHHCCHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCCHHCEEEEEECCE
LQLGHVYMRKDQLVRETMSLLNNQEGRVTEEDIISCIEMMQSEGKVIIEEERVYLASLFY
EEHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHH
SEKGVVKSIRRLMNQEETPSFPEAEVLKTLGEIEEQLNVQYAPLQQEAIQTALHKPMMLL
CCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCEECCHHHHHHHHHHCCCEEEE
TGGPGTGKTTVIKGIVEMYASLHGLSLNPNEYSDDNPFPILLTAPTGRAAKRMSESTGLP
ECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHCCCC
ACTIHRLLGWTPEGSFQRNETDPVQGKLLIIDEFSMVDIWLANQLFKSLPTNIQVIVVGD
HHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEEECC
EDQLPSVGPGQVLKDLLNAGAVPTVKLTEIYRQAEGSSVIQLAHAIKNGTLPPDLAQNQK
CCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHCCCC
DRSFIGCTGAQIVEVVKKVCENAKTKGFSARDVQVLAPMYRGPAGINVLNEALQEVFNPK
CCCEECCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHCCH
REKSKEIAYGDVVYRRGDKVLQLVNQPESQVFNGDIGEIVSVFYAKENVEQQDMIIVSFD
HHHCCCCCHHHHHHHCCHHHHHHHCCCHHHHCCCCHHHHHHHHHHHCCCCCCCEEEEEEC
GIEVTYTKPDLNQITHAYCCSIHKSQGSEFPIVIMPIVKSYNRMLRRNLIYTGITRSKKF
CEEEEEECCCHHHHHHHHHHHHHHCCCCCCCEEHHHHHHHHHHHHHHHHHHCCCCCCCEE
LIICGEEAAFQSGVNRLDDAMRQTTLASRLQESQGEVQMVTVNGEEMDVENISPYDFM
EEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCEECCCCCCCCCCC
>Mature Secondary Structure 
GNQHAMDLFEEEKKFIKAQVLHTIFHNEENLYSVVSMKVIETNETYDEKKVMINGHFPR
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHEEHHEEEEEECCCCCCCCEEEEECCCCC
MHEDEVFTLTGHFKDHPKYGKQYLVETFKKELPQTKAGMVQYLASDLFKGIGKRTAEKIV
CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
DHLGEHAISKIMDDPEALNGVVNKQKAQEIYETIVEHQGLEKVMSFLNGYGFGTKLSIKI
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCEEEHHH
YQQYKEMTLEVIRNNPYQLIEEVDGIGFGRADDIGRALGISGNHDDRVRAGCFYTLENVS
HHHHHHHHHHHHHCCHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCCHHCEEEEEECCE
LQLGHVYMRKDQLVRETMSLLNNQEGRVTEEDIISCIEMMQSEGKVIIEEERVYLASLFY
EEHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHH
SEKGVVKSIRRLMNQEETPSFPEAEVLKTLGEIEEQLNVQYAPLQQEAIQTALHKPMMLL
CCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCEECCHHHHHHHHHHCCCEEEE
TGGPGTGKTTVIKGIVEMYASLHGLSLNPNEYSDDNPFPILLTAPTGRAAKRMSESTGLP
ECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHCCCC
ACTIHRLLGWTPEGSFQRNETDPVQGKLLIIDEFSMVDIWLANQLFKSLPTNIQVIVVGD
HHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEEECC
EDQLPSVGPGQVLKDLLNAGAVPTVKLTEIYRQAEGSSVIQLAHAIKNGTLPPDLAQNQK
CCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHCCCC
DRSFIGCTGAQIVEVVKKVCENAKTKGFSARDVQVLAPMYRGPAGINVLNEALQEVFNPK
CCCEECCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHCCH
REKSKEIAYGDVVYRRGDKVLQLVNQPESQVFNGDIGEIVSVFYAKENVEQQDMIIVSFD
HHHCCCCCHHHHHHHCCHHHHHHHCCCHHHHCCCCHHHHHHHHHHHCCCCCCCEEEEEEC
GIEVTYTKPDLNQITHAYCCSIHKSQGSEFPIVIMPIVKSYNRMLRRNLIYTGITRSKKF
CEEEEEECCCHHHHHHHHHHHHHHCCCCCCCEEHHHHHHHHHHHHHHHHHHCCCCCCCEE
LIICGEEAAFQSGVNRLDDAMRQTTLASRLQESQGEVQMVTVNGEEMDVENISPYDFM
EEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: DNA-dependent ATPase activity; Phosphoric ester hydrolysis [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]