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The map label for this gene is ybfM [H]

Identifier: 49481401

GI number: 49481401

Start: 4603560

End: 4604150

Strand: Reverse

Name: ybfM [H]

Synonym: BT9727_4560

Alternate gene names: 49481401

Gene position: 4604150-4603560 (Counterclockwise)

Preceding gene: 49481426

Following gene: 49478792

Centisome position: 87.9

GC content: 32.83

Gene sequence:

>591_bases
ATGGAATTACATGAATTATTATCATATATTGAGCAGTACGGTTATTGGGCGTTATTTTTCTGTTTATGGTTAGGTATTAT
CGGTATGCCAATTCCAGATGAAATGATTGTTATGAGCGGAGGATTTGTCTCTTCACTAGGGATATTAAGTATCATTCCTG
CATTTTTATTAACGTATTTAGGAGTTGTATCCGGGCTTTCTTTAGGTTATATACTAGGGAAAATATTTGGTACAAAAGTA
CTTCATAAACTAATGAAAAAGAAAAAGGCAAAATATCTTTTGAAATCTCAACAAATGGTAGAGAAATATGGTCATTATGC
GTTAGTTACAAGTTACTTCATACCAGTTGTAAGACATATCGTACCGTATTTAGTTGGAATGAATAACATGTCATTTCGGA
TATATGCTTTGTATTCCTATACGACAGGATTTGTTTGGACACTCATTTATTTCGTGCTCGGTTCTTTATTCGGACAACAT
ATTGAAAGAATTGTAGCAGTTGCGATAGAGTATGGCGTATATTTTGGAGTAATTGTCGTTTTAATTGGCAGTTTGTTTTA
TGTAAAAAGAAGTGCGGTAGTTAGTAAGTAG

Upstream 100 bases:

>100_bases
AGCACTTCTTTCCTGAAATTACACTAGAAAAAGTGTGGCTCAATTTCCCGCCAGCTTACATCTTTAGCTGTAAAAAAGAG
CTAAGGAGAGCATATGCATA

Downstream 100 bases:

>100_bases
AGGAGGCTGTTCCAAAATACATTTTGGAACAGCCTTTTTTGTTGTTTCTACTGTCAGTTTTTGTCGGTAAGTCGATATTC
CTTGTCGAAACGTCGATATA

Product: DedA family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 196; Mature: 196

Protein sequence:

>196_residues
MELHELLSYIEQYGYWALFFCLWLGIIGMPIPDEMIVMSGGFVSSLGILSIIPAFLLTYLGVVSGLSLGYILGKIFGTKV
LHKLMKKKKAKYLLKSQQMVEKYGHYALVTSYFIPVVRHIVPYLVGMNNMSFRIYALYSYTTGFVWTLIYFVLGSLFGQH
IERIVAVAIEYGVYFGVIVVLIGSLFYVKRSAVVSK

Sequences:

>Translated_196_residues
MELHELLSYIEQYGYWALFFCLWLGIIGMPIPDEMIVMSGGFVSSLGILSIIPAFLLTYLGVVSGLSLGYILGKIFGTKV
LHKLMKKKKAKYLLKSQQMVEKYGHYALVTSYFIPVVRHIVPYLVGMNNMSFRIYALYSYTTGFVWTLIYFVLGSLFGQH
IERIVAVAIEYGVYFGVIVVLIGSLFYVKRSAVVSK
>Mature_196_residues
MELHELLSYIEQYGYWALFFCLWLGIIGMPIPDEMIVMSGGFVSSLGILSIIPAFLLTYLGVVSGLSLGYILGKIFGTKV
LHKLMKKKKAKYLLKSQQMVEKYGHYALVTSYFIPVVRHIVPYLVGMNNMSFRIYALYSYTTGFVWTLIYFVLGSLFGQH
IERIVAVAIEYGVYFGVIVVLIGSLFYVKRSAVVSK

Specific function: Unknown

COG id: COG0586

COG function: function code S; Uncharacterized membrane-associated protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dedA family [H]

Homologues:

Organism=Escherichia coli, GI1788656, Length=165, Percent_Identity=27.2727272727273, Blast_Score=73, Evalue=1e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015414 [H]

Pfam domain/function: PF09335 SNARE_assoc [H]

EC number: NA

Molecular weight: Translated: 22202; Mature: 22202

Theoretical pI: Translated: 9.74; Mature: 9.74

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MELHELLSYIEQYGYWALFFCLWLGIIGMPIPDEMIVMSGGFVSSLGILSIIPAFLLTYL
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHEECCCHHHHHHHHHHHHHHHHHHH
GVVSGLSLGYILGKIFGTKVLHKLMKKKKAKYLLKSQQMVEKYGHYALVTSYFIPVVRHI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
VPYLVGMNNMSFRIYALYSYTTGFVWTLIYFVLGSLFGQHIERIVAVAIEYGVYFGVIVV
HHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LIGSLFYVKRSAVVSK
HHHHHHHHHHHHHCCC
>Mature Secondary Structure
MELHELLSYIEQYGYWALFFCLWLGIIGMPIPDEMIVMSGGFVSSLGILSIIPAFLLTYL
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHEECCCHHHHHHHHHHHHHHHHHHH
GVVSGLSLGYILGKIFGTKVLHKLMKKKKAKYLLKSQQMVEKYGHYALVTSYFIPVVRHI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
VPYLVGMNNMSFRIYALYSYTTGFVWTLIYFVLGSLFGQHIERIVAVAIEYGVYFGVIVV
HHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LIGSLFYVKRSAVVSK
HHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]