Click here to switch to the map view.

The map label for this gene is psd

Identifier: 49481397

GI number: 49481397

Start: 4136709

End: 4137497

Strand: Reverse

Name: psd

Synonym: BT9727_4073

Alternate gene names: 49481397

Gene position: 4137497-4136709 (Counterclockwise)

Preceding gene: 49481469

Following gene: 49480654

Centisome position: 78.99

GC content: 36.63

Gene sequence:

>789_bases
TTGCGACGTACATTATATCGACTTATGATCGAACTTACAAATGGTCGTTTTACTTCTTATATATTACGTAAATTTGCACA
ATCTCGTTTGAGCTCTATCATTATTCCATCGTATGTGAAAGTGTTTCAAATTAATCAAGATGAGATGGAAAAGGGTTTGA
AGGAATATAGAACATTGCATGAATTATTTACACGTAAGCTAAAAGAGGGAAAGCGTAGTATTGATACAGATGCATCGAGT
ATCGTTAGTCCTGTTGATGGTGTTTTTGCTGATTACGGTCCTATTGAGGACGCAAAAACATTTGATATTAAAGGAAAGCG
TTATTCGATTGTGGATATGCTAGGTAATGAAGAACGTGCACAGCGATATGCAGGTGGTACATATATGGTTATTTATTTAA
GCCCAAGTCATTATCATCGTATTCATAGTCCGCTTTCTGGTTCTGTGACTGAAAGATTTGTACTCGGTAGAAAATCATAT
CCGGTAAATGCAGCTGGTATGGAATACGGGAAAGAACCATTATCAAAAAACTATCGCTCCGTTACAGAAGTGAATAGTGA
CGGTGAACATATGGCGCTTGTAAAAGTAGGAGCTATGTTTGTAAATAGTATTGAGCTGCTGCATGAAAGAGACACTGTTC
AAAAAGGTGAAGAAATGGCATACTTTACATTCGGTTCAACAGTTGTGTTATTGTTTGAAAAAGATATGATAGAAGTAGTG
CAAGAATTGAAGAGTGGACAAGAGCTTCGCCTTGGTGAAAAAATTGCTACTCGATTGGCTCATAAGTAA

Upstream 100 bases:

>100_bases
GTTCTATATGATATGTGGGAATAAGAACTAATTTTACATATGATATAGAAGGAAAAGAAGGGGAAGCTAAAGTTATAGAC
TGATTAGGAGGTTCCGCAAT

Downstream 100 bases:

>100_bases
AAAAGATTTTATAACTGTAAGCAAGATTTATGGACAAAGATGCGTAATGATGAAATCCCCTAGATGGGAGTACTTGTTTA
TTCGAGAGCCATCGCAGGAT

Product: phosphatidylserine decarboxylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 262; Mature: 262

Protein sequence:

>262_residues
MRRTLYRLMIELTNGRFTSYILRKFAQSRLSSIIIPSYVKVFQINQDEMEKGLKEYRTLHELFTRKLKEGKRSIDTDASS
IVSPVDGVFADYGPIEDAKTFDIKGKRYSIVDMLGNEERAQRYAGGTYMVIYLSPSHYHRIHSPLSGSVTERFVLGRKSY
PVNAAGMEYGKEPLSKNYRSVTEVNSDGEHMALVKVGAMFVNSIELLHERDTVQKGEEMAYFTFGSTVVLLFEKDMIEVV
QELKSGQELRLGEKIATRLAHK

Sequences:

>Translated_262_residues
MRRTLYRLMIELTNGRFTSYILRKFAQSRLSSIIIPSYVKVFQINQDEMEKGLKEYRTLHELFTRKLKEGKRSIDTDASS
IVSPVDGVFADYGPIEDAKTFDIKGKRYSIVDMLGNEERAQRYAGGTYMVIYLSPSHYHRIHSPLSGSVTERFVLGRKSY
PVNAAGMEYGKEPLSKNYRSVTEVNSDGEHMALVKVGAMFVNSIELLHERDTVQKGEEMAYFTFGSTVVLLFEKDMIEVV
QELKSGQELRLGEKIATRLAHK
>Mature_262_residues
MRRTLYRLMIELTNGRFTSYILRKFAQSRLSSIIIPSYVKVFQINQDEMEKGLKEYRTLHELFTRKLKEGKRSIDTDASS
IVSPVDGVFADYGPIEDAKTFDIKGKRYSIVDMLGNEERAQRYAGGTYMVIYLSPSHYHRIHSPLSGSVTERFVLGRKSY
PVNAAGMEYGKEPLSKNYRSVTEVNSDGEHMALVKVGAMFVNSIELLHERDTVQKGEEMAYFTFGSTVVLLFEKDMIEVV
QELKSGQELRLGEKIATRLAHK

Specific function: Unknown

COG id: COG0688

COG function: function code I; Phosphatidylserine decarboxylase

Gene ontology:

Cell location: Membrane-Associated [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phosphatidylserine decarboxylase family. Type 1 subfamily [H]

Homologues:

Organism=Homo sapiens, GI13489112, Length=291, Percent_Identity=27.8350515463918, Blast_Score=98, Evalue=9e-21,
Organism=Escherichia coli, GI1790604, Length=274, Percent_Identity=30.6569343065693, Blast_Score=125, Evalue=3e-30,
Organism=Caenorhabditis elegans, GI71980843, Length=237, Percent_Identity=29.535864978903, Blast_Score=76, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI71980840, Length=238, Percent_Identity=29.4117647058824, Blast_Score=75, Evalue=3e-14,
Organism=Saccharomyces cerevisiae, GI6321609, Length=201, Percent_Identity=28.8557213930348, Blast_Score=92, Evalue=1e-19,
Organism=Drosophila melanogaster, GI24649526, Length=294, Percent_Identity=26.8707482993197, Blast_Score=84, Evalue=1e-16,
Organism=Drosophila melanogaster, GI24649528, Length=294, Percent_Identity=26.8707482993197, Blast_Score=84, Evalue=1e-16,
Organism=Drosophila melanogaster, GI24649524, Length=294, Percent_Identity=26.8707482993197, Blast_Score=84, Evalue=1e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003817
- InterPro:   IPR005221 [H]

Pfam domain/function: PF02666 PS_Dcarbxylase [H]

EC number: =4.1.1.65 [H]

Molecular weight: Translated: 29943; Mature: 29943

Theoretical pI: Translated: 9.41; Mature: 9.41

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRRTLYRLMIELTNGRFTSYILRKFAQSRLSSIIIPSYVKVFQINQDEMEKGLKEYRTLH
CHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEECCHHHHHHHHHHHHHHH
ELFTRKLKEGKRSIDTDASSIVSPVDGVFADYGPIEDAKTFDIKGKRYSIVDMLGNEERA
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCEEECCCCEEEEHHHHCCHHHH
QRYAGGTYMVIYLSPSHYHRIHSPLSGSVTERFVLGRKSYPVNAAGMEYGKEPLSKNYRS
HHHCCCEEEEEEECCCHHHHHCCCCCCCHHHHHHHCCCCCCCCCHHHHHCCCHHHHHHHH
VTEVNSDGEHMALVKVGAMFVNSIELLHERDTVQKGEEMAYFTFGSTVVLLFEKDMIEVV
HHHCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCEEEEEEHHHHHHHH
QELKSGQELRLGEKIATRLAHK
HHHHCCCCCHHHHHHHHHHCCC
>Mature Secondary Structure
MRRTLYRLMIELTNGRFTSYILRKFAQSRLSSIIIPSYVKVFQINQDEMEKGLKEYRTLH
CHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEECCHHHHHHHHHHHHHHH
ELFTRKLKEGKRSIDTDASSIVSPVDGVFADYGPIEDAKTFDIKGKRYSIVDMLGNEERA
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCEEECCCCEEEEHHHHCCHHHH
QRYAGGTYMVIYLSPSHYHRIHSPLSGSVTERFVLGRKSYPVNAAGMEYGKEPLSKNYRS
HHHCCCEEEEEEECCCHHHHHCCCCCCCHHHHHHHCCCCCCCCCHHHHHCCCHHHHHHHH
VTEVNSDGEHMALVKVGAMFVNSIELLHERDTVQKGEEMAYFTFGSTVVLLFEKDMIEVV
HHHCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCEEEEEEHHHHHHHH
QELKSGQELRLGEKIATRLAHK
HHHHCCCCCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA