Click here to switch to the map view.

The map label for this gene is yqjB [H]

Identifier: 49480911

GI number: 49480911

Start: 3974615

End: 3975175

Strand: Reverse

Name: yqjB [H]

Synonym: BT9727_3894

Alternate gene names: 49480911

Gene position: 3975175-3974615 (Counterclockwise)

Preceding gene: 49478845

Following gene: 49480617

Centisome position: 75.9

GC content: 37.25

Gene sequence:

>561_bases
ATGCCGTATCTTCTCTCTTTCATATTATGTCTTTCTTTATCGCCTATTTGGCCTCTTGGTGATAACCCGCGTGCCGGTGA
TCCTTTCATTATTGTAAATAAAGCGACGAATAAATTAGCTTATATTGACGATGGGAAAATTCAGAAGGTTTTTCCAGTCG
CGACAGGGAAAACAAACGAATTAACTCCAGAGGGAACTTTTGATATTGTAATGAAAGCGAAGAACCCATATTATATTGCG
AAGAATATTCCTGGGGGATCACCGAAAAATCCACTTGGATCTAGGTGGATGGGGTTTAATGCAAGAGGAACGGATGGAAG
TAAATATGGAATACATGGAACAAACCAACCTAGTTCAATTGGAAAGTATATTTCACAAGGATGTATAAGAATGAAGAAAA
ACGATGTGGAGTATTTATTTGATCGCATTCCAATTGGAACGAAAGTATGGATTGTGAAATCGAAAAAATCATTTCAGCAA
TTGGCAAAAGAAAAAGGAGCCGTTGCATATGAAAAAGCCAACGAAAAGGTTGGCTTTTTCATATGGAATAAGTTGTCTTG
A

Upstream 100 bases:

>100_bases
GTTCAACTTGTGTATGAAATGGAGCAATATTTACTCATTAAAAGTCGTTTTAAGGGAAAGGATAATATAAAAGAACTTAT
ATAGAAGGTAGGAATTGTTT

Downstream 100 bases:

>100_bases
CATGTGTACATAACCATGCGTTAATGAGAGTATAGAAAGATAAAATTAGATAAAGGGGTTGCTCATATGTACTTGAATCC
AAAGCTTTCGTATATGCAGT

Product: ErfK/SrfK protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 186; Mature: 185

Protein sequence:

>186_residues
MPYLLSFILCLSLSPIWPLGDNPRAGDPFIIVNKATNKLAYIDDGKIQKVFPVATGKTNELTPEGTFDIVMKAKNPYYIA
KNIPGGSPKNPLGSRWMGFNARGTDGSKYGIHGTNQPSSIGKYISQGCIRMKKNDVEYLFDRIPIGTKVWIVKSKKSFQQ
LAKEKGAVAYEKANEKVGFFIWNKLS

Sequences:

>Translated_186_residues
MPYLLSFILCLSLSPIWPLGDNPRAGDPFIIVNKATNKLAYIDDGKIQKVFPVATGKTNELTPEGTFDIVMKAKNPYYIA
KNIPGGSPKNPLGSRWMGFNARGTDGSKYGIHGTNQPSSIGKYISQGCIRMKKNDVEYLFDRIPIGTKVWIVKSKKSFQQ
LAKEKGAVAYEKANEKVGFFIWNKLS
>Mature_185_residues
PYLLSFILCLSLSPIWPLGDNPRAGDPFIIVNKATNKLAYIDDGKIQKVFPVATGKTNELTPEGTFDIVMKAKNPYYIAK
NIPGGSPKNPLGSRWMGFNARGTDGSKYGIHGTNQPSSIGKYISQGCIRMKKNDVEYLFDRIPIGTKVWIVKSKKSFQQL
AKEKGAVAYEKANEKVGFFIWNKLS

Specific function: Unknown

COG id: COG1376

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Periplasmic Protein [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the YkuD family [H]

Homologues:

Organism=Escherichia coli, GI1788299, Length=152, Percent_Identity=33.5526315789474, Blast_Score=73, Evalue=1e-14,
Organism=Escherichia coli, GI1787968, Length=151, Percent_Identity=34.4370860927152, Blast_Score=65, Evalue=2e-12,
Organism=Escherichia coli, GI1787356, Length=165, Percent_Identity=32.1212121212121, Blast_Score=63, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005490 [H]

Pfam domain/function: PF03734 YkuD [H]

EC number: NA

Molecular weight: Translated: 20666; Mature: 20535

Theoretical pI: Translated: 10.29; Mature: 10.29

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPYLLSFILCLSLSPIWPLGDNPRAGDPFIIVNKATNKLAYIDDGKIQKVFPVATGKTNE
CHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCCEEEEECCCCCEEEEEECCCCCCC
LTPEGTFDIVMKAKNPYYIAKNIPGGSPKNPLGSRWMGFNARGTDGSKYGIHGTNQPSSI
CCCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCHHHH
GKYISQGCIRMKKNDVEYLFDRIPIGTKVWIVKSKKSFQQLAKEKGAVAYEKANEKVGFF
HHHHHHHHHHCCCCCHHHHHHHCCCCEEEEEEECHHHHHHHHHHCCCEEEECCCCEEEEE
IWNKLS
EEEECC
>Mature Secondary Structure 
PYLLSFILCLSLSPIWPLGDNPRAGDPFIIVNKATNKLAYIDDGKIQKVFPVATGKTNE
HHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCCEEEEECCCCCEEEEEECCCCCCC
LTPEGTFDIVMKAKNPYYIAKNIPGGSPKNPLGSRWMGFNARGTDGSKYGIHGTNQPSSI
CCCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCHHHH
GKYISQGCIRMKKNDVEYLFDRIPIGTKVWIVKSKKSFQQLAKEKGAVAYEKANEKVGFF
HHHHHHHHHHCCCCCHHHHHHHCCCCEEEEEEECHHHHHHHHHHCCCEEEECCCCEEEEE
IWNKLS
EEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969508; 9384377 [H]