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The map label for this gene is yjhR [C]

Identifier: 49480851

GI number: 49480851

Start: 3052863

End: 3055142

Strand: Reverse

Name: yjhR [C]

Synonym: BT9727_2975

Alternate gene names: 49480851

Gene position: 3055142-3052863 (Counterclockwise)

Preceding gene: 49479518

Following gene: 49478072

Centisome position: 58.33

GC content: 38.29

Gene sequence:

>2280_bases
ATGAATACACCTACTCAAACTCCTTCATTATCGGAAACGATGAAAGAGTGGCATTATGCATTAGCGTATGAAATTAAACA
TTGGAAAACGATAGGTGGTAGTAAAATTTCTATCATGAACGGTCGTTTTTTATATACAGATTATGAAAGCACAGTATACG
TATTTCAGCTTATTTCGGAAGTAAGCTTACCTGAAGGTTCACCAATTCGAATTGAGTTCGATGGTGAGGAAGCGACAGGA
GAAGTATTATCTGTACATGGATTAGAAATAGAACTGAAATTAAATGATTATATACAGGGTGAAATACGAGAAGCTGTTTT
ATATAGTGAACCGTGGCAATTGTTAGAGCAACTGCAAGAGAGGTTGAAGGAAGCGCGTAAAGATAAGCTGAAACGTAATC
GTATAAAGCGTCTTGTTGATGGGACGAGTAGTCCGAAACATATGGAGAAGATGAAAAATCCGAAAAATGAATTGGCGTAT
CGCTCGTTTTATAATCCGACAACGTACGTATGGGGACCACCTGGAACAGGGAAGTCTTACAATTTATCACGTATTATTTC
GGCTCATTATCAAAAAGGAAAGTCGGTACTTGTGTTAGCTCATAGTAATGCAGCAGTGGACGTATTAATGAGTGAAGTAA
CGAAACAAATTGAGAAGAAAAAGAAATGGACGCCTGGTGAAATTGTTCGTTACGGTTATAGTCAGCATGAACATATACGA
AATCATGAAACGTTACTTGCGTCGAAGTTAGTTGAAACGACGAACGGATCATGGGGTGAGGAAAGACTCTATTTAGAAGA
AACACGCCAAGAGCTTCGTGAAAAAATCTTATCGTATAAAGCAACATCTGCTGATAAGAAGCGTATACAAGAGATAGAAA
GTGATCTTCGAAAGCAAAAAGCGAAAATTAAAGAAGTAGAAAAAGAATATATTGAAAATGCGAAAGTGATTGGTGCGACT
TTATCGAAATGTGCTATTGATTCACTTATTTATGAGCGTACATTTGATTTAGTTGTCGTAGATGAAGTGAGTATGGCGTT
TGTTCCGCAAATTGCATTAGCTGCTTCACTTGGAAAACGTATCGTCGTTTGTGGTGACTTTTTACAGTTACCTCCAATTG
CGATGGCAAACCATGAACTCGTTCGCAAATGGCTTGGCGAAGATATGTTTTACCATGCCGGGATTGTGGAGTCTGTTAAT
AAATCAGAAGTACATCCGAACCTGTTTATGTTGCAGGAACAAAGACGTATGCATGCGGATATATCTAAGTTTACAAACTC
ATTTATTTATAAAAATAGAGTATACGACCATCCGTCTGTTTCAGAACGTAAAGAACTTGCGCAATTGCAGCCGTTCGCAA
ATGAAGCAAGTGTTTTATTTGATACGGGCCAAATGGGAGCTTTTTCGTTAAAAGATGCTGCTTCAGGATCTCGTTTTAAC
ATTATGTCTGGTTTAGTAGCAATGCAAATGATGTTAATTGGACTGTTAGACGGTGTGCAATCCATTGGTGTTGTGACGCC
TTACAGAGCGCAGTCTCGCTTTTTATCGACGTGTATTAGAGAAATGTTACAGAGAACGAAATACCAAAACATACCTGTTT
TAGCAGCGACAGTTCATAAGTTCCAAGGATCTGAAAGAGATATGATGATTTTTGATACAGTAGATAGTTATCCGCAAGAA
CGACCTGGCGTGTTATTCTTTGATCACAAAAACCATCGCCTCGTCAATGTAGCAGTGACAAGAGCGAGAGGAAAGTTCAT
TCAATTATCAGATTGCCACTATATGCGCAAAAATTTATCGAGAAAACAAGCGTTGTCACAATTAACAGCTCATATAGAAC
GTCACGGAGATGTGTATGATCGCACGACATCAAGACAATTGTGGGAACGAAAAATATCGAAACGATTACGTTGGTTTATG
GAAATGAATCTGGAAGAGCCGAAAGGGCTATTAAAAGATATTTTAGCAGCAAAACGAAAAATTATTATTTCGCTTCCAAG
TACAAAACAAGTGGATAAACGAGTATGGCAAGCGTTAATGCGTACAAATGCGCAAATAACGGTGTATAGTGATGGACCAG
TTCCACTGAAAAATGTAAAGTTACAAAGACAAAATAAAGCTTTCCCGTTTATCGTAATTGATGATGAAATCTTCTGGGCA
GGCGCACCGCTCACATCTCAAATGATATTTGAGGGGAGTACGGAATTTCCGTACGTATGTGCAAGACTGCAAGCACCTGA
GACAATTGGTGTATTAAAAGGATTTTTAGATATTCGGTAA

Upstream 100 bases:

>100_bases
GAAAATTGAGAAAATAAGCAAGATAAAAACCTTACAAATTTTAGCGTGTTATATGGTATAGTGAGAAAGTATGTTTGGGG
AGAAGGAAGGAGATTATACG

Downstream 100 bases:

>100_bases
ATTCGGATAGGAATTCCTTGACTTTTATTTGAAATGAACTTAGAATGAATGTAATTTAATATAATTTTATGAAAATTCTT
ATCACGAGAGGTGGAGGGAC

Product: DNA helicase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 759; Mature: 759

Protein sequence:

>759_residues
MNTPTQTPSLSETMKEWHYALAYEIKHWKTIGGSKISIMNGRFLYTDYESTVYVFQLISEVSLPEGSPIRIEFDGEEATG
EVLSVHGLEIELKLNDYIQGEIREAVLYSEPWQLLEQLQERLKEARKDKLKRNRIKRLVDGTSSPKHMEKMKNPKNELAY
RSFYNPTTYVWGPPGTGKSYNLSRIISAHYQKGKSVLVLAHSNAAVDVLMSEVTKQIEKKKKWTPGEIVRYGYSQHEHIR
NHETLLASKLVETTNGSWGEERLYLEETRQELREKILSYKATSADKKRIQEIESDLRKQKAKIKEVEKEYIENAKVIGAT
LSKCAIDSLIYERTFDLVVVDEVSMAFVPQIALAASLGKRIVVCGDFLQLPPIAMANHELVRKWLGEDMFYHAGIVESVN
KSEVHPNLFMLQEQRRMHADISKFTNSFIYKNRVYDHPSVSERKELAQLQPFANEASVLFDTGQMGAFSLKDAASGSRFN
IMSGLVAMQMMLIGLLDGVQSIGVVTPYRAQSRFLSTCIREMLQRTKYQNIPVLAATVHKFQGSERDMMIFDTVDSYPQE
RPGVLFFDHKNHRLVNVAVTRARGKFIQLSDCHYMRKNLSRKQALSQLTAHIERHGDVYDRTTSRQLWERKISKRLRWFM
EMNLEEPKGLLKDILAAKRKIIISLPSTKQVDKRVWQALMRTNAQITVYSDGPVPLKNVKLQRQNKAFPFIVIDDEIFWA
GAPLTSQMIFEGSTEFPYVCARLQAPETIGVLKGFLDIR

Sequences:

>Translated_759_residues
MNTPTQTPSLSETMKEWHYALAYEIKHWKTIGGSKISIMNGRFLYTDYESTVYVFQLISEVSLPEGSPIRIEFDGEEATG
EVLSVHGLEIELKLNDYIQGEIREAVLYSEPWQLLEQLQERLKEARKDKLKRNRIKRLVDGTSSPKHMEKMKNPKNELAY
RSFYNPTTYVWGPPGTGKSYNLSRIISAHYQKGKSVLVLAHSNAAVDVLMSEVTKQIEKKKKWTPGEIVRYGYSQHEHIR
NHETLLASKLVETTNGSWGEERLYLEETRQELREKILSYKATSADKKRIQEIESDLRKQKAKIKEVEKEYIENAKVIGAT
LSKCAIDSLIYERTFDLVVVDEVSMAFVPQIALAASLGKRIVVCGDFLQLPPIAMANHELVRKWLGEDMFYHAGIVESVN
KSEVHPNLFMLQEQRRMHADISKFTNSFIYKNRVYDHPSVSERKELAQLQPFANEASVLFDTGQMGAFSLKDAASGSRFN
IMSGLVAMQMMLIGLLDGVQSIGVVTPYRAQSRFLSTCIREMLQRTKYQNIPVLAATVHKFQGSERDMMIFDTVDSYPQE
RPGVLFFDHKNHRLVNVAVTRARGKFIQLSDCHYMRKNLSRKQALSQLTAHIERHGDVYDRTTSRQLWERKISKRLRWFM
EMNLEEPKGLLKDILAAKRKIIISLPSTKQVDKRVWQALMRTNAQITVYSDGPVPLKNVKLQRQNKAFPFIVIDDEIFWA
GAPLTSQMIFEGSTEFPYVCARLQAPETIGVLKGFLDIR
>Mature_759_residues
MNTPTQTPSLSETMKEWHYALAYEIKHWKTIGGSKISIMNGRFLYTDYESTVYVFQLISEVSLPEGSPIRIEFDGEEATG
EVLSVHGLEIELKLNDYIQGEIREAVLYSEPWQLLEQLQERLKEARKDKLKRNRIKRLVDGTSSPKHMEKMKNPKNELAY
RSFYNPTTYVWGPPGTGKSYNLSRIISAHYQKGKSVLVLAHSNAAVDVLMSEVTKQIEKKKKWTPGEIVRYGYSQHEHIR
NHETLLASKLVETTNGSWGEERLYLEETRQELREKILSYKATSADKKRIQEIESDLRKQKAKIKEVEKEYIENAKVIGAT
LSKCAIDSLIYERTFDLVVVDEVSMAFVPQIALAASLGKRIVVCGDFLQLPPIAMANHELVRKWLGEDMFYHAGIVESVN
KSEVHPNLFMLQEQRRMHADISKFTNSFIYKNRVYDHPSVSERKELAQLQPFANEASVLFDTGQMGAFSLKDAASGSRFN
IMSGLVAMQMMLIGLLDGVQSIGVVTPYRAQSRFLSTCIREMLQRTKYQNIPVLAATVHKFQGSERDMMIFDTVDSYPQE
RPGVLFFDHKNHRLVNVAVTRARGKFIQLSDCHYMRKNLSRKQALSQLTAHIERHGDVYDRTTSRQLWERKISKRLRWFM
EMNLEEPKGLLKDILAAKRKIIISLPSTKQVDKRVWQALMRTNAQITVYSDGPVPLKNVKLQRQNKAFPFIVIDDEIFWA
GAPLTSQMIFEGSTEFPYVCARLQAPETIGVLKGFLDIR

Specific function: Unknown

COG id: COG1112

COG function: function code L; Superfamily I DNA and RNA helicases and helicase subunits

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the DNA2/NAM7 helicase family [H]

Homologues:

Organism=Homo sapiens, GI18375673, Length=426, Percent_Identity=26.7605633802817, Blast_Score=100, Evalue=4e-21,
Organism=Homo sapiens, GI119392094, Length=474, Percent_Identity=26.5822784810127, Blast_Score=98, Evalue=3e-20,
Organism=Caenorhabditis elegans, GI71981659, Length=468, Percent_Identity=24.5726495726496, Blast_Score=96, Evalue=1e-19,
Organism=Caenorhabditis elegans, GI17533987, Length=353, Percent_Identity=24.0793201133144, Blast_Score=69, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17533985, Length=353, Percent_Identity=24.0793201133144, Blast_Score=68, Evalue=2e-11,
Organism=Saccharomyces cerevisiae, GI6322835, Length=465, Percent_Identity=25.8064516129032, Blast_Score=94, Evalue=1e-19,
Organism=Saccharomyces cerevisiae, GI6323726, Length=466, Percent_Identity=24.0343347639485, Blast_Score=84, Evalue=8e-17,
Organism=Saccharomyces cerevisiae, GI6323462, Length=503, Percent_Identity=23.6580516898608, Blast_Score=76, Evalue=2e-14,
Organism=Drosophila melanogaster, GI18859757, Length=454, Percent_Identity=26.8722466960352, Blast_Score=109, Evalue=8e-24,
Organism=Drosophila melanogaster, GI221330969, Length=455, Percent_Identity=23.0769230769231, Blast_Score=80, Evalue=5e-15,
Organism=Drosophila melanogaster, GI24660647, Length=455, Percent_Identity=23.0769230769231, Blast_Score=80, Evalue=5e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014001
- InterPro:   IPR004483 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 87193; Mature: 87193

Theoretical pI: Translated: 9.61; Mature: 9.61

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNTPTQTPSLSETMKEWHYALAYEIKHWKTIGGSKISIMNGRFLYTDYESTVYVFQLISE
CCCCCCCCCHHHHHHHHHHHHHHHHHHHEECCCCEEEEECCEEEEECCCHHHHHHHHHHH
VSLPEGSPIRIEFDGEEATGEVLSVHGLEIELKLNDYIQGEIREAVLYSEPWQLLEQLQE
HCCCCCCEEEEEECCCCCCCCEEEEECEEEEEEECCHHHHHHHHHHHHCCHHHHHHHHHH
RLKEARKDKLKRNRIKRLVDGTSSPKHMEKMKNPKNELAYRSFYNPTTYVWGPPGTGKSY
HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCHHHHHHHHCCCCCCEEECCCCCCCCC
NLSRIISAHYQKGKSVLVLAHSNAAVDVLMSEVTKQIEKKKKWTPGEIVRYGYSQHEHIR
CHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHH
NHETLLASKLVETTNGSWGEERLYLEETRQELREKILSYKATSADKKRIQEIESDLRKQK
HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
AKIKEVEKEYIENAKVIGATLSKCAIDSLIYERTFDLVVVDEVSMAFVPQIALAASLGKR
HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCEEEECCHHHHHHHHHHHHHHCCCE
IVVCGDFLQLPPIAMANHELVRKWLGEDMFYHAGIVESVNKSEVHPNLFMLQEQRRMHAD
EEEECCHHHCCCCHHCCHHHHHHHHCCCHHHHHHHHHCCCHHHCCCCHHHHHHHHHHHHH
ISKFTNSFIYKNRVYDHPSVSERKELAQLQPFANEASVLFDTGQMGAFSLKDAASGSRFN
HHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCCEECCCCCCCCCHH
IMSGLVAMQMMLIGLLDGVQSIGVVTPYRAQSRFLSTCIREMLQRTKYQNIPVLAATVHK
HHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH
FQGSERDMMIFDTVDSYPQERPGVLFFDHKNHRLVNVAVTRARGKFIQLSDCHYMRKNLS
HCCCCCCEEEEECHHCCCCCCCCEEEEECCCCEEEEEEEEECCCCEEEECCHHHHHHCCH
RKQALSQLTAHIERHGDVYDRTTSRQLWERKISKRLRWFMEMNLEEPKGLLKDILAAKRK
HHHHHHHHHHHHHHCCCHHHCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCE
IIISLPSTKQVDKRVWQALMRTNAQITVYSDGPVPLKNVKLQRQNKAFPFIVIDDEIFWA
EEEECCCCHHHHHHHHHHHHHCCCEEEEECCCCCCHHCCEEECCCCCCCEEEECCCEEEC
GAPLTSQMIFEGSTEFPYVCARLQAPETIGVLKGFLDIR
CCCHHHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHCCC
>Mature Secondary Structure
MNTPTQTPSLSETMKEWHYALAYEIKHWKTIGGSKISIMNGRFLYTDYESTVYVFQLISE
CCCCCCCCCHHHHHHHHHHHHHHHHHHHEECCCCEEEEECCEEEEECCCHHHHHHHHHHH
VSLPEGSPIRIEFDGEEATGEVLSVHGLEIELKLNDYIQGEIREAVLYSEPWQLLEQLQE
HCCCCCCEEEEEECCCCCCCCEEEEECEEEEEEECCHHHHHHHHHHHHCCHHHHHHHHHH
RLKEARKDKLKRNRIKRLVDGTSSPKHMEKMKNPKNELAYRSFYNPTTYVWGPPGTGKSY
HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCHHHHHHHHCCCCCCEEECCCCCCCCC
NLSRIISAHYQKGKSVLVLAHSNAAVDVLMSEVTKQIEKKKKWTPGEIVRYGYSQHEHIR
CHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHH
NHETLLASKLVETTNGSWGEERLYLEETRQELREKILSYKATSADKKRIQEIESDLRKQK
HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
AKIKEVEKEYIENAKVIGATLSKCAIDSLIYERTFDLVVVDEVSMAFVPQIALAASLGKR
HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCEEEECCHHHHHHHHHHHHHHCCCE
IVVCGDFLQLPPIAMANHELVRKWLGEDMFYHAGIVESVNKSEVHPNLFMLQEQRRMHAD
EEEECCHHHCCCCHHCCHHHHHHHHCCCHHHHHHHHHCCCHHHCCCCHHHHHHHHHHHHH
ISKFTNSFIYKNRVYDHPSVSERKELAQLQPFANEASVLFDTGQMGAFSLKDAASGSRFN
HHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCCEECCCCCCCCCHH
IMSGLVAMQMMLIGLLDGVQSIGVVTPYRAQSRFLSTCIREMLQRTKYQNIPVLAATVHK
HHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH
FQGSERDMMIFDTVDSYPQERPGVLFFDHKNHRLVNVAVTRARGKFIQLSDCHYMRKNLS
HCCCCCCEEEEECHHCCCCCCCCEEEEECCCCEEEEEEEEECCCCEEEECCHHHHHHCCH
RKQALSQLTAHIERHGDVYDRTTSRQLWERKISKRLRWFMEMNLEEPKGLLKDILAAKRK
HHHHHHHHHHHHHHCCCHHHCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCE
IIISLPSTKQVDKRVWQALMRTNAQITVYSDGPVPLKNVKLQRQNKAFPFIVIDDEIFWA
EEEECCCCHHHHHHHHHHHHHCCCEEEEECCCCCCHHCCEEECCCCCCCEEEECCCEEEC
GAPLTSQMIFEGSTEFPYVCARLQAPETIGVLKGFLDIR
CCCHHHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]