Click here to switch to the map view.

The map label for this gene is yahJ [H]

Identifier: 49480677

GI number: 49480677

Start: 4293048

End: 4294298

Strand: Reverse

Name: yahJ [H]

Synonym: BT9727_4230

Alternate gene names: 49480677

Gene position: 4294298-4293048 (Counterclockwise)

Preceding gene: 49478663

Following gene: 49478662

Centisome position: 81.99

GC content: 38.13

Gene sequence:

>1251_bases
GTGAGTGTGAAATCACAATATTGGTTAACGAATGTAAAACTTGAATGTGGGTACGTATATGAGGAATCACGAATTACAAG
TACAGAAACGGAAATTTGTAGTTTATTTATTGAAGATGGAAAGATTACGAACATATTACCTGGAATTGTATCAGAGCAAG
ATGGTGAAGTAGTAAATGCAAATGGTTTACTGGCATTACCAGCATTTGAAGAAATGCATATCCATATTGATAAGACGTAT
TATGGTGGACCATGGAAAGCGTGTACACCAGTAAAGAGTATATTCACTCGTATTCATGAGGAGCAAACTATTCTTCCGAA
GCAATTAGAAACTGCAAAGAGTAGAGCGGAGAAAATGTTGCAATTACTTCTTGAAAATGGAGCGACAAATATTCGAACAC
ATTGCAATATTGATCCTGTAATTGGTCTTGGGAATTTAGAAGCAACGATTGCGGCACTGGAAACATATAAAGATAAGTTA
TCAGCAAAAATTGTAGCATTCCCGCAACACGGTTTGTTACGAAGTAATTCCGTAGGGCTTGTAAAAGACGCTATGCGTAT
GGGAGCTCATTTAGTAGGTGGAGTAGACCCAGCTACAGTAGATGGTAATATTGAAAAATCATTGAATACAATTATGGATA
TTGCAGTAGAGTTTGATTCAGACATTGATATTCATTTACATGACGCGGATCAACTCGGAACATTTACAATGAAGAGATTA
GCTGCATTAACAGAAGAAGCAGGGTGGCAAGGAAGAGTTACGATTAGTCATGCTCTTGGACTTGGAGATGTATCTGTAGA
AGAAGCGGGGGAAATGGCTGAACGACTTGCGGCATTAGGTATTGATATAACGTCAACAGTTCCAATTAGTAGACATGTAA
TTCCAGTTCCGTTATTAAATCGTAAAGGTGTAAAAGTTTCGCTAGGAAACGATAGTATAACTGATCATTGGTCTCCGTTT
GGGACAGGAGATATGTTGCAAAAGGCAAATTGTCTAGCGGAGAGATTTAGATGGATTGATGAGCGCTCTTTAGGGAAAGC
ACTTCAGTTTATTACGGGTGGGAAATCTATATTAGATGATCAAGGAAATCGTCAATGGCCAAAAATTGGGGATGAAGCAA
ATATCGTCTTTACAGAAGCATCATGTTCAGCCGAGGTAGTAGCAAGACAAACAGAGCGCTGTGCGGTTTTATATAAAGGA
AATGTTGTTGCTGGTAGTTTGGAAAAAACGGCTATAAATAATCTTGTTTGA

Upstream 100 bases:

>100_bases
TTCTATCAGTGTAAAAATGATTTTACACTGATAGAAATTTTTATCTGTTTTTGTTTCGTTTGTAAGTAGAAAAATCATAT
TGCGAAGGGAGATTGACAAA

Downstream 100 bases:

>100_bases
GAGGATGATGGAAATGCAAAATGCGTATTGGTTAACGAATGTACGATTAGAAACAGGTTACAAGTTTAATAATGAAGTAG
TTACAGGTACAGAAACAGCT

Product: putative deaminase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 416; Mature: 415

Protein sequence:

>416_residues
MSVKSQYWLTNVKLECGYVYEESRITSTETEICSLFIEDGKITNILPGIVSEQDGEVVNANGLLALPAFEEMHIHIDKTY
YGGPWKACTPVKSIFTRIHEEQTILPKQLETAKSRAEKMLQLLLENGATNIRTHCNIDPVIGLGNLEATIAALETYKDKL
SAKIVAFPQHGLLRSNSVGLVKDAMRMGAHLVGGVDPATVDGNIEKSLNTIMDIAVEFDSDIDIHLHDADQLGTFTMKRL
AALTEEAGWQGRVTISHALGLGDVSVEEAGEMAERLAALGIDITSTVPISRHVIPVPLLNRKGVKVSLGNDSITDHWSPF
GTGDMLQKANCLAERFRWIDERSLGKALQFITGGKSILDDQGNRQWPKIGDEANIVFTEASCSAEVVARQTERCAVLYKG
NVVAGSLEKTAINNLV

Sequences:

>Translated_416_residues
MSVKSQYWLTNVKLECGYVYEESRITSTETEICSLFIEDGKITNILPGIVSEQDGEVVNANGLLALPAFEEMHIHIDKTY
YGGPWKACTPVKSIFTRIHEEQTILPKQLETAKSRAEKMLQLLLENGATNIRTHCNIDPVIGLGNLEATIAALETYKDKL
SAKIVAFPQHGLLRSNSVGLVKDAMRMGAHLVGGVDPATVDGNIEKSLNTIMDIAVEFDSDIDIHLHDADQLGTFTMKRL
AALTEEAGWQGRVTISHALGLGDVSVEEAGEMAERLAALGIDITSTVPISRHVIPVPLLNRKGVKVSLGNDSITDHWSPF
GTGDMLQKANCLAERFRWIDERSLGKALQFITGGKSILDDQGNRQWPKIGDEANIVFTEASCSAEVVARQTERCAVLYKG
NVVAGSLEKTAINNLV
>Mature_415_residues
SVKSQYWLTNVKLECGYVYEESRITSTETEICSLFIEDGKITNILPGIVSEQDGEVVNANGLLALPAFEEMHIHIDKTYY
GGPWKACTPVKSIFTRIHEEQTILPKQLETAKSRAEKMLQLLLENGATNIRTHCNIDPVIGLGNLEATIAALETYKDKLS
AKIVAFPQHGLLRSNSVGLVKDAMRMGAHLVGGVDPATVDGNIEKSLNTIMDIAVEFDSDIDIHLHDADQLGTFTMKRLA
ALTEEAGWQGRVTISHALGLGDVSVEEAGEMAERLAALGIDITSTVPISRHVIPVPLLNRKGVKVSLGNDSITDHWSPFG
TGDMLQKANCLAERFRWIDERSLGKALQFITGGKSILDDQGNRQWPKIGDEANIVFTEASCSAEVVARQTERCAVLYKGN
VVAGSLEKTAINNLV

Specific function: Unknown

COG id: COG0402

COG function: function code FR; Cytosine deaminase and related metal-dependent hydrolases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786517, Length=407, Percent_Identity=42.7518427518428, Blast_Score=325, Evalue=4e-90,
Organism=Escherichia coli, GI1786531, Length=401, Percent_Identity=25.6857855361596, Blast_Score=111, Evalue=1e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006311 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 45422; Mature: 45291

Theoretical pI: Translated: 5.09; Mature: 5.09

Prosite motif: PS00307 LECTIN_LEGUME_BETA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVKSQYWLTNVKLECGYVYEESRITSTETEICSLFIEDGKITNILPGIVSEQDGEVVNA
CCCCCCEEEEEEEEEEEEEEECCCCCCHHHHHHEEEECCCCEEECCCCCCCCCCCCEECC
NGLLALPAFEEMHIHIDKTYYGGPWKACTPVKSIFTRIHEEQTILPKQLETAKSRAEKML
CCEEEECCCCEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
QLLLENGATNIRTHCNIDPVIGLGNLEATIAALETYKDKLSAKIVAFPQHGLLRSNSVGL
HHHHHCCCCCEEEECCCCCEEECCCHHHHHHHHHHHHHHHCEEEEEECCCCCCCCCCCHH
VKDAMRMGAHLVGGVDPATVDGNIEKSLNTIMDIAVEFDSDIDIHLHDADQLGTFTMKRL
HHHHHHHCHHHHCCCCCCEECCCHHHHHHHHHHHHEEECCCCEEEEECCHHHHHHHHHHH
AALTEEAGWQGRVTISHALGLGDVSVEEAGEMAERLAALGIDITSTVPISRHVIPVPLLN
HHHHHHCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCEECCCCCCCCEECCCCCC
RKGVKVSLGNDSITDHWSPFGTGDMLQKANCLAERFRWIDERSLGKALQFITGGKSILDD
CCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCC
QGNRQWPKIGDEANIVFTEASCSAEVVARQTERCAVLYKGNVVAGSLEKTAINNLV
CCCCCCCCCCCCCCEEEEECCCCHHHHHHCCCCEEEEEECCEEECCHHHHHHHCCC
>Mature Secondary Structure 
SVKSQYWLTNVKLECGYVYEESRITSTETEICSLFIEDGKITNILPGIVSEQDGEVVNA
CCCCCEEEEEEEEEEEEEEECCCCCCHHHHHHEEEECCCCEEECCCCCCCCCCCCEECC
NGLLALPAFEEMHIHIDKTYYGGPWKACTPVKSIFTRIHEEQTILPKQLETAKSRAEKML
CCEEEECCCCEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
QLLLENGATNIRTHCNIDPVIGLGNLEATIAALETYKDKLSAKIVAFPQHGLLRSNSVGL
HHHHHCCCCCEEEECCCCCEEECCCHHHHHHHHHHHHHHHCEEEEEECCCCCCCCCCCHH
VKDAMRMGAHLVGGVDPATVDGNIEKSLNTIMDIAVEFDSDIDIHLHDADQLGTFTMKRL
HHHHHHHCHHHHCCCCCCEECCCHHHHHHHHHHHHEEECCCCEEEEECCHHHHHHHHHHH
AALTEEAGWQGRVTISHALGLGDVSVEEAGEMAERLAALGIDITSTVPISRHVIPVPLLN
HHHHHHCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCEECCCCCCCCEECCCCCC
RKGVKVSLGNDSITDHWSPFGTGDMLQKANCLAERFRWIDERSLGKALQFITGGKSILDD
CCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCC
QGNRQWPKIGDEANIVFTEASCSAEVVARQTERCAVLYKGNVVAGSLEKTAINNLV
CCCCCCCCCCCCCCEEEEECCCCHHHHHHCCCCEEEEEECCEEECCHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]