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The map label for this gene is ydbI [H]

Identifier: 49480456

GI number: 49480456

Start: 5184682

End: 5185716

Strand: Reverse

Name: ydbI [H]

Synonym: BT9727_5118

Alternate gene names: 49480456

Gene position: 5185716-5184682 (Counterclockwise)

Preceding gene: 49481236

Following gene: 49479003

Centisome position: 99.01

GC content: 31.79

Gene sequence:

>1035_bases
ATGCAAATAAAAAACCTGTTTCAAAGCAAAGGATTTCAGAGGTTACTCGTATTAGTAATACTTGCTCTCGTGTTATATGG
GCTGCAAAGTATGTTGAATTTAATATTAATTACGTTTATTCTTACGTATTTAATGGATCGATTCCAAAAGTTTATTTCTC
GCAAATTAGACCACTTTATGCCCATTAATCGAAAGCTCATTATAGCATTTCTATATGTCATGTTAATTGGTGGAATTGCT
ATTACGCTATTTAAATATTTACCAGTGTTAACAATACAAATTTCACAATTAATTTATCAATTTAACGTATTTTTAAGAAA
CCCACCAGATAGTGAATTAATTAAGTATGCAGTTAATGCTGTCAATCATATGGAACTTTCGAAGTATGTAGGACAAGGCG
TTGACATTTTGTATAAATCGATTACGAATGTTGGAAAATTTGGCCTTCAAGTGTTACTTTCTTTAATTTTAAGTCTATTT
TTCTTATTGGAGAAAGCTCGTATCGTTGCTTTTACTGCAAAATTTAAAGAAAGTCGACTTGCAATTTTCTATACTGAAAT
TGAGTACTTCGGTAAGAAATTTGCACGTTCATTCGGAAAAGTAATCGAAGCCCAATTTTTAATTGCAGTTGTTAACTGCG
TTTTATCCGTTATTGCACTATGGATATTAGGATTCCCACAATTATTAGGTTTAGCATTAATGATCTTCTTACTTGGTTTA
ATTCCAGTAGCTGGGGTTATCATTTCGTTATTCCCGCTTTGTATGATTGCTTACAATATCGGCGGTATTATGTACGTGGT
TTATATTTTAGTTATCGTAACAGTCATTCATGCGCTTGAAAGTTACGTGTTAAATCCGAAGTTTATGTCGCAAAAAACAA
ACTTACCGATTTTCTATACGTTTATGGTATTAATCTTCTCAGAACACTTCTTAGGTGTATGGGGATTAATTATCGGTATT
CCAATCTTCATTTTCTTATTAGATGTCTTAGATGTGACAAGTGATGAAATGGAGAAGGACGTTAGAACAAAATAA

Upstream 100 bases:

>100_bases
TAAAAATCTTAATATGAATGAATAATTAAAAGTAGAAAAGAGAGAAAAATCTACTTATTAACGTTTTACTTTATAGGACA
GGAGAGAGTACTCGTCGATT

Downstream 100 bases:

>100_bases
AGCGAAGAAAAGAAAAAGCATCGATGTTCGATGCTTTTTCTCAGGCTGTGGAGAAAGTCTTCTCCACAGCCTGTTTTTGT
GTCTGAACCTCTTTTTATGT

Product: membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 344; Mature: 344

Protein sequence:

>344_residues
MQIKNLFQSKGFQRLLVLVILALVLYGLQSMLNLILITFILTYLMDRFQKFISRKLDHFMPINRKLIIAFLYVMLIGGIA
ITLFKYLPVLTIQISQLIYQFNVFLRNPPDSELIKYAVNAVNHMELSKYVGQGVDILYKSITNVGKFGLQVLLSLILSLF
FLLEKARIVAFTAKFKESRLAIFYTEIEYFGKKFARSFGKVIEAQFLIAVVNCVLSVIALWILGFPQLLGLALMIFLLGL
IPVAGVIISLFPLCMIAYNIGGIMYVVYILVIVTVIHALESYVLNPKFMSQKTNLPIFYTFMVLIFSEHFLGVWGLIIGI
PIFIFLLDVLDVTSDEMEKDVRTK

Sequences:

>Translated_344_residues
MQIKNLFQSKGFQRLLVLVILALVLYGLQSMLNLILITFILTYLMDRFQKFISRKLDHFMPINRKLIIAFLYVMLIGGIA
ITLFKYLPVLTIQISQLIYQFNVFLRNPPDSELIKYAVNAVNHMELSKYVGQGVDILYKSITNVGKFGLQVLLSLILSLF
FLLEKARIVAFTAKFKESRLAIFYTEIEYFGKKFARSFGKVIEAQFLIAVVNCVLSVIALWILGFPQLLGLALMIFLLGL
IPVAGVIISLFPLCMIAYNIGGIMYVVYILVIVTVIHALESYVLNPKFMSQKTNLPIFYTFMVLIFSEHFLGVWGLIIGI
PIFIFLLDVLDVTSDEMEKDVRTK
>Mature_344_residues
MQIKNLFQSKGFQRLLVLVILALVLYGLQSMLNLILITFILTYLMDRFQKFISRKLDHFMPINRKLIIAFLYVMLIGGIA
ITLFKYLPVLTIQISQLIYQFNVFLRNPPDSELIKYAVNAVNHMELSKYVGQGVDILYKSITNVGKFGLQVLLSLILSLF
FLLEKARIVAFTAKFKESRLAIFYTEIEYFGKKFARSFGKVIEAQFLIAVVNCVLSVIALWILGFPQLLGLALMIFLLGL
IPVAGVIISLFPLCMIAYNIGGIMYVVYILVIVTVIHALESYVLNPKFMSQKTNLPIFYTFMVLIFSEHFLGVWGLIIGI
PIFIFLLDVLDVTSDEMEKDVRTK

Specific function: Unknown

COG id: COG0628

COG function: function code R; Predicted permease

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0118 (perM) family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002549 [H]

Pfam domain/function: PF01594 UPF0118 [H]

EC number: NA

Molecular weight: Translated: 39275; Mature: 39275

Theoretical pI: Translated: 9.83; Mature: 9.83

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQIKNLFQSKGFQRLLVLVILALVLYGLQSMLNLILITFILTYLMDRFQKFISRKLDHFM
CCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
PINRKLIIAFLYVMLIGGIAITLFKYLPVLTIQISQLIYQFNVFLRNPPDSELIKYAVNA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
VNHMELSKYVGQGVDILYKSITNVGKFGLQVLLSLILSLFFLLEKARIVAFTAKFKESRL
HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
AIFYTEIEYFGKKFARSFGKVIEAQFLIAVVNCVLSVIALWILGFPQLLGLALMIFLLGL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
IPVAGVIISLFPLCMIAYNIGGIMYVVYILVIVTVIHALESYVLNPKFMSQKTNLPIFYT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCHHHHH
FMVLIFSEHFLGVWGLIIGIPIFIFLLDVLDVTSDEMEKDVRTK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCC
>Mature Secondary Structure
MQIKNLFQSKGFQRLLVLVILALVLYGLQSMLNLILITFILTYLMDRFQKFISRKLDHFM
CCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
PINRKLIIAFLYVMLIGGIAITLFKYLPVLTIQISQLIYQFNVFLRNPPDSELIKYAVNA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
VNHMELSKYVGQGVDILYKSITNVGKFGLQVLLSLILSLFFLLEKARIVAFTAKFKESRL
HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
AIFYTEIEYFGKKFARSFGKVIEAQFLIAVVNCVLSVIALWILGFPQLLGLALMIFLLGL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
IPVAGVIISLFPLCMIAYNIGGIMYVVYILVIVTVIHALESYVLNPKFMSQKTNLPIFYT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCHHHHH
FMVLIFSEHFLGVWGLIIGIPIFIFLLDVLDVTSDEMEKDVRTK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]