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The map label for this gene is rarD

Identifier: 49479471

GI number: 49479471

Start: 3391831

End: 3392772

Strand: Reverse

Name: rarD

Synonym: BT9727_3317

Alternate gene names: 49479471

Gene position: 3392772-3391831 (Counterclockwise)

Preceding gene: 49479469

Following gene: 49479475

Centisome position: 64.78

GC content: 35.88

Gene sequence:

>942_bases
ATGGGGAGTCAATCAGCACAGCAGAAAAAAGGGATCATATATGCGGCTGGTGCGTATACGATGTGGGGAATCCTACCAAT
CTATTGGAAATGGGTTGAGGAAGTTCCAGCAGATGAAATATTAGCACACCGCATCGTTTGGGCGTTCGTGTTTATGTTAA
TCGTATTAGGTGTTACGAAGAGATTTCGTCAGTTTATTGGGGAGTTCGTGAATCTTTTTAAACGACCTAAATTATTAATA
TCATTAACAATAGCTTCAGTCTTGATTAGCGGAAACTGGTTTGTCTACATATGGGCCGTTAATCATAATCATGTCATTGA
AGCAAGTCTTGGCTATTATATTAATCCGCTTATTAGTATTTTACTTGGTACAGTCGTTTTAAAGGAAAAGTTAAACTTTT
GGCAATACGTTGCAGTTGGTTTAGCTGGAGTAGGAGTTATCATTTTAACAGTACGTTTCGGGGCTATTCCATGGGTTTCT
TTATCACTTGCTCTTTCATTTGGATTATATGGATTAACGAAAAAATTGTTAAACTATGATGCGACAATTGGACTTACGAT
GGAAACGATGTTAGTAACGCCGTTTGCGATTATTTATTTAGTAATGACAGGAGTACATGGTTTCGGCTCATTTGGCTCTA
TCTCAATGTCATCGACATTACTATTAATAGGAGCGGGCATTGTTACAGCTCTACCACTTTTTTATTTTGCAAAAGGAGCA
CAACTTATTCCGCTTTATATGGTAGGTTTTTTACAATATATTGCACCAACGATTAGTTTAATTTTAGGTGTGTTCGTATT
TGGTGAACATTTCACATCTACTCATATGATTGCATTTTTCTGTATATGGGTTGCATTATTTGTATTCTCGGTAGCGAAAA
CAAAGTTCTTAGTGCAGAAACAACCGAAATTTATAAAAAATAAATCAGCAAAAGTATCATAA

Upstream 100 bases:

>100_bases
TGCTGTATGAGAAATGTCGAAAGAATTGCAGATTGATTATTGGTAAAGTGAGCACGTGGGACCGTATAATGGAGAAAAAC
GAGAAGAGGAGAAAAGGAAG

Downstream 100 bases:

>100_bases
TGCGTAGTATTTTCTACGCATTTTTCTTTATACTGATACTATAAAGGATTTCCATTATAGCTAGTAGGGAGCTGAGAACG
TGGAAACAATTTTACATAAC

Product: chloramphenicol-sensitive RarD protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 313; Mature: 312

Protein sequence:

>313_residues
MGSQSAQQKKGIIYAAGAYTMWGILPIYWKWVEEVPADEILAHRIVWAFVFMLIVLGVTKRFRQFIGEFVNLFKRPKLLI
SLTIASVLISGNWFVYIWAVNHNHVIEASLGYYINPLISILLGTVVLKEKLNFWQYVAVGLAGVGVIILTVRFGAIPWVS
LSLALSFGLYGLTKKLLNYDATIGLTMETMLVTPFAIIYLVMTGVHGFGSFGSISMSSTLLLIGAGIVTALPLFYFAKGA
QLIPLYMVGFLQYIAPTISLILGVFVFGEHFTSTHMIAFFCIWVALFVFSVAKTKFLVQKQPKFIKNKSAKVS

Sequences:

>Translated_313_residues
MGSQSAQQKKGIIYAAGAYTMWGILPIYWKWVEEVPADEILAHRIVWAFVFMLIVLGVTKRFRQFIGEFVNLFKRPKLLI
SLTIASVLISGNWFVYIWAVNHNHVIEASLGYYINPLISILLGTVVLKEKLNFWQYVAVGLAGVGVIILTVRFGAIPWVS
LSLALSFGLYGLTKKLLNYDATIGLTMETMLVTPFAIIYLVMTGVHGFGSFGSISMSSTLLLIGAGIVTALPLFYFAKGA
QLIPLYMVGFLQYIAPTISLILGVFVFGEHFTSTHMIAFFCIWVALFVFSVAKTKFLVQKQPKFIKNKSAKVS
>Mature_312_residues
GSQSAQQKKGIIYAAGAYTMWGILPIYWKWVEEVPADEILAHRIVWAFVFMLIVLGVTKRFRQFIGEFVNLFKRPKLLIS
LTIASVLISGNWFVYIWAVNHNHVIEASLGYYINPLISILLGTVVLKEKLNFWQYVAVGLAGVGVIILTVRFGAIPWVSL
SLALSFGLYGLTKKLLNYDATIGLTMETMLVTPFAIIYLVMTGVHGFGSFGSISMSSTLLLIGAGIVTALPLFYFAKGAQ
LIPLYMVGFLQYIAPTISLILGVFVFGEHFTSTHMIAFFCIWVALFVFSVAKTKFLVQKQPKFIKNKSAKVS

Specific function: Unknown

COG id: COG2962

COG function: function code R; Predicted permeases

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 DUF6 domains [H]

Homologues:

Organism=Escherichia coli, GI48994976, Length=286, Percent_Identity=41.6083916083916, Blast_Score=229, Evalue=1e-61,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000620
- InterPro:   IPR004626 [H]

Pfam domain/function: PF00892 DUF6 [H]

EC number: NA

Molecular weight: Translated: 34818; Mature: 34687

Theoretical pI: Translated: 10.21; Mature: 10.21

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGSQSAQQKKGIIYAAGAYTMWGILPIYWKWVEEVPADEILAHRIVWAFVFMLIVLGVTK
CCCCCHHHHCCEEEEECHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
RFRQFIGEFVNLFKRPKLLISLTIASVLISGNWFVYIWAVNHNHVIEASLGYYINPLISI
HHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCEEEEEEEECCCEEEEEHHHHHHHHHHHH
LLGTVVLKEKLNFWQYVAVGLAGVGVIILTVRFGAIPWVSLSLALSFGLYGLTKKLLNYD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCC
ATIGLTMETMLVTPFAIIYLVMTGVHGFGSFGSISMSSTLLLIGAGIVTALPLFYFAKGA
CEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC
QLIPLYMVGFLQYIAPTISLILGVFVFGEHFTSTHMIAFFCIWVALFVFSVAKTKFLVQK
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
QPKFIKNKSAKVS
CCHHHCCCCCCCC
>Mature Secondary Structure 
GSQSAQQKKGIIYAAGAYTMWGILPIYWKWVEEVPADEILAHRIVWAFVFMLIVLGVTK
CCCCHHHHCCEEEEECHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH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CCHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9734814; 9384377 [H]