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The map label for this gene is ybfM [H]

Identifier: 49478886

GI number: 49478886

Start: 4852897

End: 4853496

Strand: Reverse

Name: ybfM [H]

Synonym: BT9727_4802

Alternate gene names: 49478886

Gene position: 4853496-4852897 (Counterclockwise)

Preceding gene: 49478887

Following gene: 49478884

Centisome position: 92.66

GC content: 32.17

Gene sequence:

>600_bases
ATGGAATTACATGAATTATTGTCTTATATTGAGCAGTATGGTTATACCGCTTTATTCTTCTGTTTATGGCTCGGCATTGT
TGGTATGCCAATTCCAGATGAAATGATTGTTATGAGCGGTGGTTTTGTATCATCAGTGGGTATATTAAGTGTAATTCCAG
CCTTTTTGTTAACTTATTTGGGAGTTGTCTCTGGACTTTCTTTAGGTTATCTATTGGGCAAAGTATTCGGTACCAAGGTA
CTTGATAAATTAATGAAAAAGAAAAAGGCAAAGTATTTGCTACAATCACAAAGAATGATTGATAAATACGGACCTTATGC
ATTAGTAACAAGCTACTTTATACCTGTCGTTAGACACATTATTCCTTACTTAGTAGGTATGAACAACATGTCATATAGAA
AATATGCTCTATATTCATATACAACAGGGTTTGTGTGGACACTTGTTTATTTTTTACTTGGTTTCTTATTTGGAAATCAT
ATAGACACAATTGTAAAAATTACAACAGAATACGGTATTTATTTTGGTGGTATTGTCTTTATCGTTGCTTGTATTTGGTA
TGTATGTATACAAAAACGAAGTACTACGGTAAGTAAATAG

Upstream 100 bases:

>100_bases
AAGACTTTTTTCCAGATATCCAATTAAAAAAAGTTTGGTTTAACTTCCCACCAGCCTATGTCTTTAGCTGTAAAAAATCG
GTGAGGGGAGCATATGCATA

Downstream 100 bases:

>100_bases
AGAAAAGCATAAGTTTTGGAAATTACATCGGAGGAGATTTTATGAGTAAAGAAACAATCATGGTAGTGGATGATGAGAAG
GAGATTCGAGAACTCATCGC

Product: transmembrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 199; Mature: 199

Protein sequence:

>199_residues
MELHELLSYIEQYGYTALFFCLWLGIVGMPIPDEMIVMSGGFVSSVGILSVIPAFLLTYLGVVSGLSLGYLLGKVFGTKV
LDKLMKKKKAKYLLQSQRMIDKYGPYALVTSYFIPVVRHIIPYLVGMNNMSYRKYALYSYTTGFVWTLVYFLLGFLFGNH
IDTIVKITTEYGIYFGGIVFIVACIWYVCIQKRSTTVSK

Sequences:

>Translated_199_residues
MELHELLSYIEQYGYTALFFCLWLGIVGMPIPDEMIVMSGGFVSSVGILSVIPAFLLTYLGVVSGLSLGYLLGKVFGTKV
LDKLMKKKKAKYLLQSQRMIDKYGPYALVTSYFIPVVRHIIPYLVGMNNMSYRKYALYSYTTGFVWTLVYFLLGFLFGNH
IDTIVKITTEYGIYFGGIVFIVACIWYVCIQKRSTTVSK
>Mature_199_residues
MELHELLSYIEQYGYTALFFCLWLGIVGMPIPDEMIVMSGGFVSSVGILSVIPAFLLTYLGVVSGLSLGYLLGKVFGTKV
LDKLMKKKKAKYLLQSQRMIDKYGPYALVTSYFIPVVRHIIPYLVGMNNMSYRKYALYSYTTGFVWTLVYFLLGFLFGNH
IDTIVKITTEYGIYFGGIVFIVACIWYVCIQKRSTTVSK

Specific function: Unknown

COG id: COG0586

COG function: function code S; Uncharacterized membrane-associated protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dedA family [H]

Homologues:

Organism=Escherichia coli, GI1788656, Length=164, Percent_Identity=28.0487804878049, Blast_Score=71, Evalue=5e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015414 [H]

Pfam domain/function: PF09335 SNARE_assoc [H]

EC number: NA

Molecular weight: Translated: 22589; Mature: 22589

Theoretical pI: Translated: 9.52; Mature: 9.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MELHELLSYIEQYGYTALFFCLWLGIVGMPIPDEMIVMSGGFVSSVGILSVIPAFLLTYL
CCHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCHHEEECCCHHHHHHHHHHHHHHHHHHH
GVVSGLSLGYLLGKVFGTKVLDKLMKKKKAKYLLQSQRMIDKYGPYALVTSYFIPVVRHI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
IPYLVGMNNMSYRKYALYSYTTGFVWTLVYFLLGFLFGNHIDTIVKITTEYGIYFGGIVF
HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IVACIWYVCIQKRSTTVSK
HHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MELHELLSYIEQYGYTALFFCLWLGIVGMPIPDEMIVMSGGFVSSVGILSVIPAFLLTYL
CCHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCHHEEECCCHHHHHHHHHHHHHHHHHHH
GVVSGLSLGYLLGKVFGTKVLDKLMKKKKAKYLLQSQRMIDKYGPYALVTSYFIPVVRHI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
IPYLVGMNNMSYRKYALYSYTTGFVWTLVYFLLGFLFGNHIDTIVKITTEYGIYFGGIVF
HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IVACIWYVCIQKRSTTVSK
HHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]