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The map label for this gene is sigV [H]

Identifier: 49478801

GI number: 49478801

Start: 4654520

End: 4655050

Strand: Reverse

Name: sigV [H]

Synonym: BT9727_4602

Alternate gene names: 49478801

Gene position: 4655050-4654520 (Counterclockwise)

Preceding gene: 49480741

Following gene: 49478800

Centisome position: 88.88

GC content: 30.89

Gene sequence:

>531_bases
ATGGACATATCCTATCTAGTAAAACAAGCAGCAAGAGGAAATGATCAAGCATTTGAACAACTCATTACTTTTGTTCGTCC
GAAATTATATCGAACAGCCTATTCTTATGTAAGAAATGAACAAGATGCACTGGATATATACCAAGAAACAATTTATGAAG
CGTATCTTTCATTGAAAAAATTAAAAAATCCCGAGAAATTTCAAAGTTGGATTACCAAAATTCTTGTTTTTAAATCCATT
GATTTTGTAAGAAAATCCTCTAGACAATTTGTTGTGGATGATGAAATATTCACCAATTTATGTACAGAAGAGAGCATGAA
TAAATTAGAACAATCATTGGATTTAACCGAGGCATTTAATTTCTTAGATCCTACTTACAAAACTATTATTTTATTAAGGT
ATTATCACGATTTATCTATTAAGGAAATTGCTGAGGTTCTTAATTCTCCAGAAGGAACGGTAAAATCTCAATTACATCGA
GCGAAGCAAGCTTTACGCCCCATTTTAAAGGAGGGATATAGTTATGAATAA

Upstream 100 bases:

>100_bases
CATTGCAATAAATTGTAGAAGATTTATGTATATGCACTTATTTTTGCAACCTTTTTATTCTCTCATTCGACTATATTAGT
AAAGGGAGGAAGACATAAAA

Downstream 100 bases:

>100_bases
AGAAGAATTTAATTACCATATCAATGATATTCCTATACCAGAAGACAGGTTAATTCAAAGAGAAAAAACAGCCATTCTTC
AAGCTAAGAAAAATCAATAC

Product: ECF subfamily RNA polymerase sigma factor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 176; Mature: 176

Protein sequence:

>176_residues
MDISYLVKQAARGNDQAFEQLITFVRPKLYRTAYSYVRNEQDALDIYQETIYEAYLSLKKLKNPEKFQSWITKILVFKSI
DFVRKSSRQFVVDDEIFTNLCTEESMNKLEQSLDLTEAFNFLDPTYKTIILLRYYHDLSIKEIAEVLNSPEGTVKSQLHR
AKQALRPILKEGYSYE

Sequences:

>Translated_176_residues
MDISYLVKQAARGNDQAFEQLITFVRPKLYRTAYSYVRNEQDALDIYQETIYEAYLSLKKLKNPEKFQSWITKILVFKSI
DFVRKSSRQFVVDDEIFTNLCTEESMNKLEQSLDLTEAFNFLDPTYKTIILLRYYHDLSIKEIAEVLNSPEGTVKSQLHR
AKQALRPILKEGYSYE
>Mature_176_residues
MDISYLVKQAARGNDQAFEQLITFVRPKLYRTAYSYVRNEQDALDIYQETIYEAYLSLKKLKNPEKFQSWITKILVFKSI
DFVRKSSRQFVVDDEIFTNLCTEESMNKLEQSLDLTEAFNFLDPTYKTIILLRYYHDLSIKEIAEVLNSPEGTVKSQLHR
AKQALRPILKEGYSYE

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. Positively regulates the expression of proteins involved in stress responses against bacitracin, paraquat and tellurite

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 20760; Mature: 20760

Theoretical pI: Translated: 6.55; Mature: 6.55

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDISYLVKQAARGNDQAFEQLITFVRPKLYRTAYSYVRNEQDALDIYQETIYEAYLSLKK
CCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
LKNPEKFQSWITKILVFKSIDFVRKSSRQFVVDDEIFTNLCTEESMNKLEQSLDLTEAFN
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FLDPTYKTIILLRYYHDLSIKEIAEVLNSPEGTVKSQLHRAKQALRPILKEGYSYE
HHCHHHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MDISYLVKQAARGNDQAFEQLITFVRPKLYRTAYSYVRNEQDALDIYQETIYEAYLSLKK
CCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
LKNPEKFQSWITKILVFKSIDFVRKSSRQFVVDDEIFTNLCTEESMNKLEQSLDLTEAFN
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FLDPTYKTIILLRYYHDLSIKEIAEVLNSPEGTVKSQLHRAKQALRPILKEGYSYE
HHCHHHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9308178; 9384377 [H]