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The map label for this gene is yoeC [H]

Identifier: 49478744

GI number: 49478744

Start: 4531497

End: 4532063

Strand: Reverse

Name: yoeC [H]

Synonym: BT9727_4476

Alternate gene names: 49478744

Gene position: 4532063-4531497 (Counterclockwise)

Preceding gene: 49481398

Following gene: 49481402

Centisome position: 86.53

GC content: 32.28

Gene sequence:

>567_bases
ATGGAAGTTGTAGAGGCATTAAAAGATATAAGCCAAATTGAGGCTATGAAAAAGTATTTAAAAGAGCACTCACAGCGAGA
TTATCTTTTATTTGTTATTGGAATTAACACAGGATTAAAGATTACTGAGCTACTTAGTATGAAATTTGAAGAGATATTAA
ATGAAGATGGAACTGTTAAAGAGTTTTATTCTCTTCCTGTGAAAGATGAAAAGTTTAAACAAGATATTTATTTAAATACA
AAAGTAAAAGAAGCACTTTTAGAGTACGTACAATCTATTGATGTGAAAAGAGAAAACTACGTATTTCAATCTAATAAAAC
GAAAAATTCAATCTCACGCCAACAAGCGTATCGTGTCATTCATAATGCTGCTGAAGCGGTTGGGATTGTTGGAAAGATTG
GAACGAACTCAATGAGAAAAACGTTTGGATTTCATGCATACAAAAGAGGGATAGCGATTGCACTATTGCAAAAGCATTTT
CATCACGCAACGCCATCAGAGACGCTCAAGTATTTAGGAATCTCAAAAGATGAAGAATTTAAAACAGAGATTGATGTAGA
TTTGTAA

Upstream 100 bases:

>100_bases
TGAAAATAATGGATAATACATGGAAATCTCATAGCGTGATAAGGTAAAATGGACAACATGATGAGAAAATTACCGTTCAT
AAGATGAGGAGAATACATGT

Downstream 100 bases:

>100_bases
GAGCCGTAACTAAAAACTTTAGGAGGCGGGAATATGAATATTAGAGAGAGTGAATTACCGGGCATTGGATGTAAGTTTGA
AGTAATTACAAAAGGTAATG

Product: phage integrase family site specific recombinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 188; Mature: 188

Protein sequence:

>188_residues
MEVVEALKDISQIEAMKKYLKEHSQRDYLLFVIGINTGLKITELLSMKFEEILNEDGTVKEFYSLPVKDEKFKQDIYLNT
KVKEALLEYVQSIDVKRENYVFQSNKTKNSISRQQAYRVIHNAAEAVGIVGKIGTNSMRKTFGFHAYKRGIAIALLQKHF
HHATPSETLKYLGISKDEEFKTEIDVDL

Sequences:

>Translated_188_residues
MEVVEALKDISQIEAMKKYLKEHSQRDYLLFVIGINTGLKITELLSMKFEEILNEDGTVKEFYSLPVKDEKFKQDIYLNT
KVKEALLEYVQSIDVKRENYVFQSNKTKNSISRQQAYRVIHNAAEAVGIVGKIGTNSMRKTFGFHAYKRGIAIALLQKHF
HHATPSETLKYLGISKDEEFKTEIDVDL
>Mature_188_residues
MEVVEALKDISQIEAMKKYLKEHSQRDYLLFVIGINTGLKITELLSMKFEEILNEDGTVKEFYSLPVKDEKFKQDIYLNT
KVKEALLEYVQSIDVKRENYVFQSNKTKNSISRQQAYRVIHNAAEAVGIVGKIGTNSMRKTFGFHAYKRGIAIALLQKHF
HHATPSETLKYLGISKDEEFKTEIDVDL

Specific function: Fime Is One Of The 2 Regulatory Proteins Which Control The Phase Variation Of Type 1 Fimbriae In E. coli. These Proteins Mediate The Periodic Inversion Of A 300bp DNA Segment That Harbors The Promoter For The Fimbrial Structural Gene, Fima. Fime Switches

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 21695; Mature: 21695

Theoretical pI: Translated: 8.68; Mature: 8.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEVVEALKDISQIEAMKKYLKEHSQRDYLLFVIGINTGLKITELLSMKFEEILNEDGTVK
CHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCHH
EFYSLPVKDEKFKQDIYLNTKVKEALLEYVQSIDVKRENYVFQSNKTKNSISRQQAYRVI
HHHCCCCCCHHHHHHHEECHHHHHHHHHHHHHHCCCHHCEEECCCCCHHHHHHHHHHHHH
HNAAEAVGIVGKIGTNSMRKTFGFHAYKRGIAIALLQKHFHHATPSETLKYLGISKDEEF
HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCH
KTEIDVDL
HCCCCCCC
>Mature Secondary Structure
MEVVEALKDISQIEAMKKYLKEHSQRDYLLFVIGINTGLKITELLSMKFEEILNEDGTVK
CHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCHH
EFYSLPVKDEKFKQDIYLNTKVKEALLEYVQSIDVKRENYVFQSNKTKNSISRQQAYRVI
HHHCCCCCCHHHHHHHEECHHHHHHHHHHHHHHCCCHHCEEECCCCCHHHHHHHHHHHHH
HNAAEAVGIVGKIGTNSMRKTFGFHAYKRGIAIALLQKHFHHATPSETLKYLGISKDEEF
HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCH
KTEIDVDL
HCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]