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The map label for this gene is ydcN [H]

Identifier: 49478671

GI number: 49478671

Start: 4303479

End: 4304051

Strand: Reverse

Name: ydcN [H]

Synonym: BT9727_4240

Alternate gene names: 49478671

Gene position: 4304051-4303479 (Counterclockwise)

Preceding gene: 49481494

Following gene: 49478663

Centisome position: 82.17

GC content: 36.65

Gene sequence:

>573_bases
ATGAAAGAACATGAAGATATGCAAACGAAAGAAGTCATTCAGCAAGTAGGTCAGTTATTAAGACAAATTCGAAATGAACA
AAAATTAAGTTTAGAAGAATTAGCTCAAAAAACAGGGGTTAGTAAATTAACATTAGGAAAGATTGAAAGAGGCGAAACAA
ATCCGACGTTAGCTGTCATTTGGAAAATAACGAAAGGGTTATCGATTCCTTTATCGAGATTGATGGTTGTTGGAGAACCT
GTAGCGGTTGCGCGCTGCGGAGAAGGATTTGCAGTAGATGTAGGACAAGCATGGCATTTAGAAACGATGTTCCGTTATAC
GAAAGAAACGGGGATGGAAATGCACCGTGCTTGTTTAAGGGCGAATAGTATATATGAACCAGAAGCTCATCATGAAGGTG
CTATTGAGCTTGTAACGGTAATGAAAGGAAAAGTATCGATTCAAGTAGAAAGCGATGTATACGAATTAAATGAGTTTGAC
TCCATTCAATTTGAAGCGAATAAGAAACATAGTTATAAGAATGAAGAAGATGAAGTGGCAGTATTACATTTAACGATGAA
ATATTCTTCGTGA

Upstream 100 bases:

>100_bases
GAAGTATAACACTCCTTTTGGAATTAAATGATTATGTATAGTATAATATACTTTAATGTTTTAAAAGTAAACTATTTTAT
ATTTTAAGGTGGTTTTATAG

Downstream 100 bases:

>100_bases
AAAAATCACCTATAGAATGCTATAGGTGATTTTTTATATTTCCATTAAGTATATGCATAATGTCACTAGTACGAACGCGG
CATAAGTAATAAACAAATGA

Product: DNA-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 190; Mature: 190

Protein sequence:

>190_residues
MKEHEDMQTKEVIQQVGQLLRQIRNEQKLSLEELAQKTGVSKLTLGKIERGETNPTLAVIWKITKGLSIPLSRLMVVGEP
VAVARCGEGFAVDVGQAWHLETMFRYTKETGMEMHRACLRANSIYEPEAHHEGAIELVTVMKGKVSIQVESDVYELNEFD
SIQFEANKKHSYKNEEDEVAVLHLTMKYSS

Sequences:

>Translated_190_residues
MKEHEDMQTKEVIQQVGQLLRQIRNEQKLSLEELAQKTGVSKLTLGKIERGETNPTLAVIWKITKGLSIPLSRLMVVGEP
VAVARCGEGFAVDVGQAWHLETMFRYTKETGMEMHRACLRANSIYEPEAHHEGAIELVTVMKGKVSIQVESDVYELNEFD
SIQFEANKKHSYKNEEDEVAVLHLTMKYSS
>Mature_190_residues
MKEHEDMQTKEVIQQVGQLLRQIRNEQKLSLEELAQKTGVSKLTLGKIERGETNPTLAVIWKITKGLSIPLSRLMVVGEP
VAVARCGEGFAVDVGQAWHLETMFRYTKETGMEMHRACLRANSIYEPEAHHEGAIELVTVMKGKVSIQVESDVYELNEFD
SIQFEANKKHSYKNEEDEVAVLHLTMKYSS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787704, Length=170, Percent_Identity=31.1764705882353, Blast_Score=94, Evalue=4e-21,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013096
- InterPro:   IPR011051
- InterPro:   IPR001387
- InterPro:   IPR010982
- InterPro:   IPR014710 [H]

Pfam domain/function: PF07883 Cupin_2; PF01381 HTH_3 [H]

EC number: NA

Molecular weight: Translated: 21560; Mature: 21560

Theoretical pI: Translated: 5.90; Mature: 5.90

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKEHEDMQTKEVIQQVGQLLRQIRNEQKLSLEELAQKTGVSKLTLGKIERGETNPTLAVI
CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCEEEECCCCCCCCCCEEEEE
WKITKGLSIPLSRLMVVGEPVAVARCGEGFAVDVGQAWHLETMFRYTKETGMEMHRACLR
EEECCCCCCCHHHHHHHCCCCEEEECCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHH
ANSIYEPEAHHEGAIELVTVMKGKVSIQVESDVYELNEFDSIQFEANKKHSYKNEEDEVA
HCCCCCCCCCCCCCEEEEEEECCEEEEEECCCHHHCCCCCCEEEECCCCCCCCCCCCCEE
VLHLTMKYSS
EEEEEEEECC
>Mature Secondary Structure
MKEHEDMQTKEVIQQVGQLLRQIRNEQKLSLEELAQKTGVSKLTLGKIERGETNPTLAVI
CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCEEEECCCCCCCCCCEEEEE
WKITKGLSIPLSRLMVVGEPVAVARCGEGFAVDVGQAWHLETMFRYTKETGMEMHRACLR
EEECCCCCCCHHHHHHHCCCCEEEECCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHH
ANSIYEPEAHHEGAIELVTVMKGKVSIQVESDVYELNEFDSIQFEANKKHSYKNEEDEVA
HCCCCCCCCCCCCCEEEEEEECCEEEEEECCCHHHCCCCCCEEEECCCCCCCCCCCCCEE
VLHLTMKYSS
EEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]