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The map label for this gene is glcT

Identifier: 49478509

GI number: 49478509

Start: 3885800

End: 3886648

Strand: Reverse

Name: glcT

Synonym: BT9727_3792

Alternate gene names: 49478509

Gene position: 3886648-3885800 (Counterclockwise)

Preceding gene: 49478510

Following gene: 49481777

Centisome position: 74.21

GC content: 32.86

Gene sequence:

>849_bases
ATGAGTAATTATCTAGAAATTAAAAAAGTTTTAAATAATAATGTCATCATTGCTAGCCATCCTGAACACGAGGAAGTAGT
AGTGATTGGTAAAGGAATTGGATTTGGAAAAAAAGCGAAAGATGTATTGGAGCAAGAACAAATTGAAAAAATGTTTGTTT
TAAAAAATGAACGTGATCGTGAACAATACAAACTGTTAGTGCCGCATGTGAGTGAAAAATTAATTGAATTAATGAATGAT
ATTATGTTCTATATTCAAGAAAAAGCAAAATCACCATTAAATGAACATATTCATATCGCTTTAACAGATCATATTTCTTT
TGCAATTAAACGATTAAAACAAGGACTTACAATTGATAATCCTTTTTTAGTTGAAACGAAAATGCTCTATCCAGAAGAAT
ATGAAATTGCTGAAGGTGTTGTAGATCTTTTAAATTCTCGTTTGCAAATTACATTGCCAGAAGGAGAAATTGGTTTTATT
GCACTTCATATTTACAGTTCGCTTACAAATTCAGATCTATCTTCAGTGAATCAAAACTCCCGTCTCATTGCACAGCTTGT
ATCTTTAATTGAGACAAACTTACAAATTACATTGGACCAAGAAAGTATCCACTATTTACGCCTTATCCGTCATTTGCAAT
ATGCTATTGAACGGGTGAAAAAAGGGGAGAAAGTAGAGGAATCACAAAGTTTTGCTGAGTTATTAAAGGCGGAATATCCT
GTCTGTTATAATTTAGCTTGGAAGCTAGTTAAGGTCATGCAAAAAGAATTGCAACTTCCTGTGTATGAAGCGGAAAGCAT
ATATTTAACGATGCACCTGCAGCGCTTAGTGAAGGCGGAGCATGTGTAA

Upstream 100 bases:

>100_bases
AAAATGAATTTTTATGAAATGGTAGATGTTTTACATTGACGACAAAGAAGAATGTTCTGTAACATAAAAGCAGGCTATTT
AAGGATGAGGGTGGTGTTAT

Downstream 100 bases:

>100_bases
AAAGAAATATATTTTTGTCTAAAATGAAAACGTTAAAAAAAATCATTGAATCGCTTACAATAGTTATGTATAATAACTAT
TGCAAAGTTATACAAATTTC

Product: BigG family transcription antiterminator

Products: NA

Alternate protein names: RNA-binding antitermination protein GlcT [H]

Number of amino acids: Translated: 282; Mature: 281

Protein sequence:

>282_residues
MSNYLEIKKVLNNNVIIASHPEHEEVVVIGKGIGFGKKAKDVLEQEQIEKMFVLKNERDREQYKLLVPHVSEKLIELMND
IMFYIQEKAKSPLNEHIHIALTDHISFAIKRLKQGLTIDNPFLVETKMLYPEEYEIAEGVVDLLNSRLQITLPEGEIGFI
ALHIYSSLTNSDLSSVNQNSRLIAQLVSLIETNLQITLDQESIHYLRLIRHLQYAIERVKKGEKVEESQSFAELLKAEYP
VCYNLAWKLVKVMQKELQLPVYEAESIYLTMHLQRLVKAEHV

Sequences:

>Translated_282_residues
MSNYLEIKKVLNNNVIIASHPEHEEVVVIGKGIGFGKKAKDVLEQEQIEKMFVLKNERDREQYKLLVPHVSEKLIELMND
IMFYIQEKAKSPLNEHIHIALTDHISFAIKRLKQGLTIDNPFLVETKMLYPEEYEIAEGVVDLLNSRLQITLPEGEIGFI
ALHIYSSLTNSDLSSVNQNSRLIAQLVSLIETNLQITLDQESIHYLRLIRHLQYAIERVKKGEKVEESQSFAELLKAEYP
VCYNLAWKLVKVMQKELQLPVYEAESIYLTMHLQRLVKAEHV
>Mature_281_residues
SNYLEIKKVLNNNVIIASHPEHEEVVVIGKGIGFGKKAKDVLEQEQIEKMFVLKNERDREQYKLLVPHVSEKLIELMNDI
MFYIQEKAKSPLNEHIHIALTDHISFAIKRLKQGLTIDNPFLVETKMLYPEEYEIAEGVVDLLNSRLQITLPEGEIGFIA
LHIYSSLTNSDLSSVNQNSRLIAQLVSLIETNLQITLDQESIHYLRLIRHLQYAIERVKKGEKVEESQSFAELLKAEYPV
CYNLAWKLVKVMQKELQLPVYEAESIYLTMHLQRLVKAEHV

Specific function: Mediates the positive regulation of the glucose PTS operon (ptsGHI) by functioning as an antiterminator factor of transcription via its interaction with the RNA-antiterminator (RAT) sequence located upstream of the ptsG gene. The RNA-binding domain of Glc

COG id: COG3711

COG function: function code K; Transcriptional antiterminator

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PRD domains [H]

Homologues:

Organism=Escherichia coli, GI1790160, Length=278, Percent_Identity=30.2158273381295, Blast_Score=158, Evalue=3e-40,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004341
- InterPro:   IPR011608
- InterPro:   IPR001550 [H]

Pfam domain/function: PF03123 CAT_RBD; PF00874 PRD [H]

EC number: NA

Molecular weight: Translated: 32646; Mature: 32515

Theoretical pI: Translated: 6.14; Mature: 6.14

Prosite motif: PS00654 ANTITERMINATORS_BGLG

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNYLEIKKVLNNNVIIASHPEHEEVVVIGKGIGFGKKAKDVLEQEQIEKMFVLKNERDR
CCCHHHHHHHHCCCEEEEECCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCH
EQYKLLVPHVSEKLIELMNDIMFYIQEKAKSPLNEHIHIALTDHISFAIKRLKQGLTIDN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEHHHHHHHHHHHHCCCCCCC
PFLVETKMLYPEEYEIAEGVVDLLNSRLQITLPEGEIGFIALHIYSSLTNSDLSSVNQNS
CEEEEEEECCCCHHHHHHHHHHHHCCCEEEEECCCCEEEEHHHHHHHHCCHHHHHCCCCH
RLIAQLVSLIETNLQITLDQESIHYLRLIRHLQYAIERVKKGEKVEESQSFAELLKAEYP
HHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCC
VCYNLAWKLVKVMQKELQLPVYEAESIYLTMHLQRLVKAEHV
HHHHHHHHHHHHHHHHHCCCEECCCCEEHHHHHHHHHHHCCC
>Mature Secondary Structure 
SNYLEIKKVLNNNVIIASHPEHEEVVVIGKGIGFGKKAKDVLEQEQIEKMFVLKNERDR
CCHHHHHHHHCCCEEEEECCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCH
EQYKLLVPHVSEKLIELMNDIMFYIQEKAKSPLNEHIHIALTDHISFAIKRLKQGLTIDN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEHHHHHHHHHHHHCCCCCCC
PFLVETKMLYPEEYEIAEGVVDLLNSRLQITLPEGEIGFIALHIYSSLTNSDLSSVNQNS
CEEEEEEECCCCHHHHHHHHHHHHCCCEEEEECCCCEEEEHHHHHHHHCCHHHHHCCCCH
RLIAQLVSLIETNLQITLDQESIHYLRLIRHLQYAIERVKKGEKVEESQSFAELLKAEYP
HHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCC
VCYNLAWKLVKVMQKELQLPVYEAESIYLTMHLQRLVKAEHV
HHHHHHHHHHHHHHHHHCCCEECCCCEEHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11902727; 9384377 [H]