Click here to switch to the map view.

The map label for this gene is ylmH [H]

Identifier: 49478438

GI number: 49478438

Start: 3739188

End: 3739955

Strand: Reverse

Name: ylmH [H]

Synonym: BT9727_3639

Alternate gene names: 49478438

Gene position: 3739955-3739188 (Counterclockwise)

Preceding gene: 49478439

Following gene: 49478896

Centisome position: 71.4

GC content: 36.07

Gene sequence:

>768_bases
ATGAGCATCTACGAGCATTTTAGACCTGATGAAGTAGTTTTTGTGGATAAAGTATTAGAGTGGAAACAGGCGGCTGAGTA
CCATCAAGTGAAGTTAACAGACTTTCTTGATCCAAGACAACAACAAATTGTCACTATGGTAATAGGACAAGGGGATATTG
CTGTACAGTTTGATGGTGCAACGTCTCACGCAGAGCGTAAAAGAGCACTCATTTATCCGGACTATCTAGTAGTAAATGAA
GAAGAATTTCAAGTAGAAGTATTGGAAATTGACTATCCTTCCAAGTTTTATACGCTAGAGCATAGGCAAATATTAGGTAC
ATTTATGTCTCTCGGTTTAACGAGAGAAAAATGTGGTGATATTTTGCTTCAAGAAGATCGTGCCCAAATTGTAGTCGCAA
AAGAAGTTGTATCTTATATTGAGATGAACTTACAATCTATAGGGAAAGTGAAAGTCTCCTTATCACCAGTGAAAGGAGAA
AAAATTCTACAGATACAAGAAACATGGGGAGAGAAATCTGGAACGGTTTCTTCACTTCGTTTAGATGTTATGTTAGCTGA
AATGTTACATATATCTAGACAAAAAGTACAACCTTTCATAAAAAATGGTTTAGTAAAAGTCAATTGGAAAACAGTGGAGC
AAACCTCTTATGAATGTTATCCAGGAGATGTTTTTTCAGTGAGAGGGTATGGACGAAGTAAATTGTTTTCTGTAGAAGGT
AGAACAAAGCGCGACAAATGGAGAATTTTGTATGGTATACTAAAATGA

Upstream 100 bases:

>100_bases
GATTGACATCTCACCACTCGTTGCGATTTTTGCGTTGAAACTTGCTACAAGTGGTTTAGTAACTTTATTCGGCTATTTCT
TATAGTAAGAGGTTAGATGA

Downstream 100 bases:

>100_bases
TTGGTTTTTTAGAAGGAAATCCTCCTATTTTGTCGAAGAAAAGATATAATTGAAAGAGGAAATTTAGATAACTACTTGGA
GGTGGCGTTGTGCCGTTAAC

Product: S4 domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 255; Mature: 254

Protein sequence:

>255_residues
MSIYEHFRPDEVVFVDKVLEWKQAAEYHQVKLTDFLDPRQQQIVTMVIGQGDIAVQFDGATSHAERKRALIYPDYLVVNE
EEFQVEVLEIDYPSKFYTLEHRQILGTFMSLGLTREKCGDILLQEDRAQIVVAKEVVSYIEMNLQSIGKVKVSLSPVKGE
KILQIQETWGEKSGTVSSLRLDVMLAEMLHISRQKVQPFIKNGLVKVNWKTVEQTSYECYPGDVFSVRGYGRSKLFSVEG
RTKRDKWRILYGILK

Sequences:

>Translated_255_residues
MSIYEHFRPDEVVFVDKVLEWKQAAEYHQVKLTDFLDPRQQQIVTMVIGQGDIAVQFDGATSHAERKRALIYPDYLVVNE
EEFQVEVLEIDYPSKFYTLEHRQILGTFMSLGLTREKCGDILLQEDRAQIVVAKEVVSYIEMNLQSIGKVKVSLSPVKGE
KILQIQETWGEKSGTVSSLRLDVMLAEMLHISRQKVQPFIKNGLVKVNWKTVEQTSYECYPGDVFSVRGYGRSKLFSVEG
RTKRDKWRILYGILK
>Mature_254_residues
SIYEHFRPDEVVFVDKVLEWKQAAEYHQVKLTDFLDPRQQQIVTMVIGQGDIAVQFDGATSHAERKRALIYPDYLVVNEE
EFQVEVLEIDYPSKFYTLEHRQILGTFMSLGLTREKCGDILLQEDRAQIVVAKEVVSYIEMNLQSIGKVKVSLSPVKGEK
ILQIQETWGEKSGTVSSLRLDVMLAEMLHISRQKVQPFIKNGLVKVNWKTVEQTSYECYPGDVFSVRGYGRSKLFSVEGR
TKRDKWRILYGILK

Specific function: Unknown

COG id: COG2302

COG function: function code S; Uncharacterized conserved protein, contains S4-like domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S4 RNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002942 [H]

Pfam domain/function: PF01479 S4 [H]

EC number: NA

Molecular weight: Translated: 29470; Mature: 29339

Theoretical pI: Translated: 7.06; Mature: 7.06

Prosite motif: PS50889 S4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIYEHFRPDEVVFVDKVLEWKQAAEYHQVKLTDFLDPRQQQIVTMVIGQGDIAVQFDGA
CCCHHHCCCCCEEEHHHHHHHHHHHHHHEEEEHHCCCCHHHEEEEEEECCCCEEEEECCC
TSHAERKRALIYPDYLVVNEEEFQVEVLEIDYPSKFYTLEHRQILGTFMSLGLTREKCGD
CCHHHHCCEEECCCEEEEECCCEEEEEEEECCCCCEEEEHHHHHHHHHHHCCCCHHHHCC
ILLQEDRAQIVVAKEVVSYIEMNLQSIGKVKVSLSPVKGEKILQIQETWGEKSGTVSSLR
EEEECCCCEEEEHHHHHHHHHHHHHHCCEEEEEEECCCCCEEEEEHHHCCCCCCCHHHHH
LDVMLAEMLHISRQKVQPFIKNGLVKVNWKTVEQTSYECYPGDVFSVRGYGRSKLFSVEG
HHHHHHHHHHHHHHHHHHHHHCCEEEEEEEEEECCCCCCCCCCEEEECCCCCCEEEEECC
RTKRDKWRILYGILK
CCCCCCEEEEEEECC
>Mature Secondary Structure 
SIYEHFRPDEVVFVDKVLEWKQAAEYHQVKLTDFLDPRQQQIVTMVIGQGDIAVQFDGA
CCHHHCCCCCEEEHHHHHHHHHHHHHHEEEEHHCCCCHHHEEEEEEECCCCEEEEECCC
TSHAERKRALIYPDYLVVNEEEFQVEVLEIDYPSKFYTLEHRQILGTFMSLGLTREKCGD
CCHHHHCCEEECCCEEEEECCCEEEEEEEECCCCCEEEEHHHHHHHHHHHCCCCHHHHCC
ILLQEDRAQIVVAKEVVSYIEMNLQSIGKVKVSLSPVKGEKILQIQETWGEKSGTVSSLR
EEEECCCCEEEEHHHHHHHHHHHHHHCCEEEEEEECCCCCEEEEEHHHCCCCCCCHHHHH
LDVMLAEMLHISRQKVQPFIKNGLVKVNWKTVEQTSYECYPGDVFSVRGYGRSKLFSVEG
HHHHHHHHHHHHHHHHHHHHHCCEEEEEEEEEECCCCCCCCCCEEEECCCCCCEEEEECC
RTKRDKWRILYGILK
CCCCCCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9045828; 9384377 [H]