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The map label for this gene is fdhD

Identifier: 49478277

GI number: 49478277

Start: 3400136

End: 3400933

Strand: Reverse

Name: fdhD

Synonym: BT9727_3328

Alternate gene names: 49478277

Gene position: 3400933-3400136 (Counterclockwise)

Preceding gene: 49479466

Following gene: 49478276

Centisome position: 64.93

GC content: 34.46

Gene sequence:

>798_bases
GTGAAACCGATACAGGTAGAAAGAGAAATCTTTCGTTATGAACAAGGGGCGTTTAAACATATAGAGGACAGCATTGTAAC
AGAGTTTCCAGTCACGATTAAAATGAACGGACATGAGTTTGTTACAATGGTTAGTACTCCAGAATATATAGAAGATATGG
TAATAGGCTTCTTAGCATCTGAAGGAATCATTCGGAAGTATGAAGATATTGATGACATATGGGTACAAGAGAAAGAAGGA
TTTGTACATGTCACGACGGCAAAAGTAAATCCGTATTATGAACAAATGCAAAATAAACGTTACATTACTTCATGCTGTGG
TATGAGTAGACAAGGATTTGTCTTTGCAAATGATGCACTAAGCGCAAAGAAAATGAATGGCGTGCATGTACAAGTTACTG
CAGAAGACTGTTTTCGATTAATGAAAGAAATGCAGCAATCTGCGGAGACATTTCGTCATACAGGGGGCGTTCATAATGCG
TCTTTATGTGATGTAAATGGTATTATTTTAAGTAGAATGGATATCGGAAGGCATAATGCGTTAGATAAAATTTATGGTTA
TTGCTTAAAAAATAATATTTCTATAGGAGATAAAATCATTGTTTTTAGCGGTCGTATTTCTTCGGAAATATTATTGAAAG
TTGCAAAAATTGGTTGTGAAATTATATTGTCAAAATCAGCTCCAACTGAGTTAGCTTTGCAGCTAGCAGAAGAATTAGGT
ATTACTACGATAGGATTTATTCGGAATCAATCCTTAAATGTATATACGCACCCAGAGCGTGTTTTAAATATAAAATAA

Upstream 100 bases:

>100_bases
AAATTAGTGAATTTGTTTTCAGATATGAAAGTAGAAGAAGATATTGCAGTTTCGGTATTTGTTTTTGATAAAAATATAAC
GTGAGAGAAGGATACTGATC

Downstream 100 bases:

>100_bases
GTAAAAGCGAGGCAATAAATATGAAATCTGTCACATTAGACAAACTACAACGTCCGTTAAAGGATTTACGTATTTCAGTT
ACTGATCGCTGTAATTTTCG

Product: formate dehydrogenase accessory protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 265; Mature: 265

Protein sequence:

>265_residues
MKPIQVEREIFRYEQGAFKHIEDSIVTEFPVTIKMNGHEFVTMVSTPEYIEDMVIGFLASEGIIRKYEDIDDIWVQEKEG
FVHVTTAKVNPYYEQMQNKRYITSCCGMSRQGFVFANDALSAKKMNGVHVQVTAEDCFRLMKEMQQSAETFRHTGGVHNA
SLCDVNGIILSRMDIGRHNALDKIYGYCLKNNISIGDKIIVFSGRISSEILLKVAKIGCEIILSKSAPTELALQLAEELG
ITTIGFIRNQSLNVYTHPERVLNIK

Sequences:

>Translated_265_residues
MKPIQVEREIFRYEQGAFKHIEDSIVTEFPVTIKMNGHEFVTMVSTPEYIEDMVIGFLASEGIIRKYEDIDDIWVQEKEG
FVHVTTAKVNPYYEQMQNKRYITSCCGMSRQGFVFANDALSAKKMNGVHVQVTAEDCFRLMKEMQQSAETFRHTGGVHNA
SLCDVNGIILSRMDIGRHNALDKIYGYCLKNNISIGDKIIVFSGRISSEILLKVAKIGCEIILSKSAPTELALQLAEELG
ITTIGFIRNQSLNVYTHPERVLNIK
>Mature_265_residues
MKPIQVEREIFRYEQGAFKHIEDSIVTEFPVTIKMNGHEFVTMVSTPEYIEDMVIGFLASEGIIRKYEDIDDIWVQEKEG
FVHVTTAKVNPYYEQMQNKRYITSCCGMSRQGFVFANDALSAKKMNGVHVQVTAEDCFRLMKEMQQSAETFRHTGGVHNA
SLCDVNGIILSRMDIGRHNALDKIYGYCLKNNISIGDKIIVFSGRISSEILLKVAKIGCEIILSKSAPTELALQLAEELG
ITTIGFIRNQSLNVYTHPERVLNIK

Specific function: Necessary for formate dehydrogenase activity [H]

COG id: COG1526

COG function: function code C; Uncharacterized protein required for formate dehydrogenase activity

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fdhD family [H]

Homologues:

Organism=Escherichia coli, GI1790329, Length=269, Percent_Identity=28.6245353159851, Blast_Score=94, Evalue=1e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003786 [H]

Pfam domain/function: PF02634 FdhD-NarQ [H]

EC number: NA

Molecular weight: Translated: 30008; Mature: 30008

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
6.0 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
6.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKPIQVEREIFRYEQGAFKHIEDSIVTEFPVTIKMNGHEFVTMVSTPEYIEDMVIGFLAS
CCCCHHHHHHHHHHCCHHHHHHHHHHEECCEEEEECCCEEEEEECCHHHHHHHHHHHHHC
EGIIRKYEDIDDIWVQEKEGFVHVTTAKVNPYYEQMQNKRYITSCCGMSRQGFVFANDAL
CCHHHHHCCHHHHHEECCCCEEEEEEEECCHHHHHHCCCHHHHHHCCCCCCCEEEECCCC
SAKKMNGVHVQVTAEDCFRLMKEMQQSAETFRHTGGVHNASLCDVNGIILSRMDIGRHNA
CHHCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCEEEEEECCCCHHH
LDKIYGYCLKNNISIGDKIIVFSGRISSEILLKVAKIGCEIILSKSAPTELALQLAEELG
HHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHCEEEEEECCCCHHHHHHHHHHCC
ITTIGFIRNQSLNVYTHPERVLNIK
CEEEEEEECCCEEEEECCCEEEECC
>Mature Secondary Structure
MKPIQVEREIFRYEQGAFKHIEDSIVTEFPVTIKMNGHEFVTMVSTPEYIEDMVIGFLAS
CCCCHHHHHHHHHHCCHHHHHHHHHHEECCEEEEECCCEEEEEECCHHHHHHHHHHHHHC
EGIIRKYEDIDDIWVQEKEGFVHVTTAKVNPYYEQMQNKRYITSCCGMSRQGFVFANDAL
CCHHHHHCCHHHHHEECCCCEEEEEEEECCHHHHHHCCCHHHHHHCCCCCCCEEEECCCC
SAKKMNGVHVQVTAEDCFRLMKEMQQSAETFRHTGGVHNASLCDVNGIILSRMDIGRHNA
CHHCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCEEEEEECCCCHHH
LDKIYGYCLKNNISIGDKIIVFSGRISSEILLKVAKIGCEIILSKSAPTELALQLAEELG
HHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHCEEEEEECCCCHHHHHHHHHHCC
ITTIGFIRNQSLNVYTHPERVLNIK
CEEEEEEECCCEEEEECCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA