Click here to switch to the map view.

The map label for this gene is xylR [H]

Identifier: 49478195

GI number: 49478195

Start: 3205498

End: 3206550

Strand: Reverse

Name: xylR [H]

Synonym: BT9727_3139

Alternate gene names: 49478195

Gene position: 3206550-3205498 (Counterclockwise)

Preceding gene: 49481596

Following gene: 49479013

Centisome position: 61.22

GC content: 32.67

Gene sequence:

>1053_bases
ATGTTGATTAAGGTGGTGAGCGATTTGAGTGAACAGTTTGTTACTCAAAAATCGATTAAAGAGACAATCCTTCGCGGCAT
TCGTAAAGTTCTTTTAGAGCGAGGTAGTGCAACGAAAGTTGAGCTTAGTAATACATTAGAAATCAGTTTTCCAACGATAA
GTAAATTTATAGAAAAAATGAAACAAGATGGTGAAGTCACTTTAGCTGGTTTAGATGATTCAAGTGGTGGAAGAAGAGCG
AAACGATATGAATATAATCCAGAATATATGTTAGGTTTAGCGATATTTTTAGAAAAAAATGAGACAAACTATACAATTTT
CAACTGTTTAGGGGAAGTAAAAGAACAAGGAAGTACTTCAAGTGTATTAATTGATACGGGCGTAAATGTATTATCTAAAC
ATATTGAAAGTCTTATCGCTACATTCCCGAAAATAAGCTCTATATCAATTGGTGTGCCTGGTTCGGTTGATAATGGTCGC
ATTTTTTATATTCCTGGATATGAAAAGTTCCAAAATTTTAATTTGAAAAGTCATTTGGAGAATCTCTTTTCTATACCAGT
AGTAATAGAAAACGATATGAATGCTGCAGTGCTTGGTTATTATAAAAACACCGGAAACTATGATAATTCCTCTCTTGTAT
ATTTGTATTCCGGTCAAAATGGTCCAGGTGCAGGTATTATGATAAATGGAGATGTAGTACGAGGAAGTACATTTTTCTCA
GGAGAGGTATCTTTCGTTCCGCAATATGATAATAAAAATTTCTTACAAGCTTTGAGAAGTGAAGATTCAAATAATCCAGA
GGAATATAATATAGATGCTATTACTCGTTTAATCGCTACATGTATAGCTATTATTAACCCTCATGCCTTTATCTTCTGTG
ATGATGAAGTGAATCAATTTGTTATAGATCAAATTGTAAAAACTTGTCCGCAGTACATTCCGGCGGAACATATTCCGAAA
ATAACAGTGAGTAATTGGAAAGAAGATTATTTATATGGATTAAAAAGTCTAGGACTTGATCTTATGATTACGAGAACGAA
TAAAGAAAATTAA

Upstream 100 bases:

>100_bases
AAACAGAGAGTGCGTGCAGCGGAAATATATCATCTCAATTGCTTTAGAAAATGATGTATGATATATTGTCAACGCAACTT
ATTAAAAGGGTTTAATAAGT

Downstream 100 bases:

>100_bases
ATGTACTGGCAATGAAGCATTCAATTGTTAGTTGAATAACATAAAAGAAAAGGTGTCGATTATGAAAATTGAACATGTAG
CAATTTGGGTGAATGATTTA

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 350; Mature: 350

Protein sequence:

>350_residues
MLIKVVSDLSEQFVTQKSIKETILRGIRKVLLERGSATKVELSNTLEISFPTISKFIEKMKQDGEVTLAGLDDSSGGRRA
KRYEYNPEYMLGLAIFLEKNETNYTIFNCLGEVKEQGSTSSVLIDTGVNVLSKHIESLIATFPKISSISIGVPGSVDNGR
IFYIPGYEKFQNFNLKSHLENLFSIPVVIENDMNAAVLGYYKNTGNYDNSSLVYLYSGQNGPGAGIMINGDVVRGSTFFS
GEVSFVPQYDNKNFLQALRSEDSNNPEEYNIDAITRLIATCIAIINPHAFIFCDDEVNQFVIDQIVKTCPQYIPAEHIPK
ITVSNWKEDYLYGLKSLGLDLMITRTNKEN

Sequences:

>Translated_350_residues
MLIKVVSDLSEQFVTQKSIKETILRGIRKVLLERGSATKVELSNTLEISFPTISKFIEKMKQDGEVTLAGLDDSSGGRRA
KRYEYNPEYMLGLAIFLEKNETNYTIFNCLGEVKEQGSTSSVLIDTGVNVLSKHIESLIATFPKISSISIGVPGSVDNGR
IFYIPGYEKFQNFNLKSHLENLFSIPVVIENDMNAAVLGYYKNTGNYDNSSLVYLYSGQNGPGAGIMINGDVVRGSTFFS
GEVSFVPQYDNKNFLQALRSEDSNNPEEYNIDAITRLIATCIAIINPHAFIFCDDEVNQFVIDQIVKTCPQYIPAEHIPK
ITVSNWKEDYLYGLKSLGLDLMITRTNKEN
>Mature_350_residues
MLIKVVSDLSEQFVTQKSIKETILRGIRKVLLERGSATKVELSNTLEISFPTISKFIEKMKQDGEVTLAGLDDSSGGRRA
KRYEYNPEYMLGLAIFLEKNETNYTIFNCLGEVKEQGSTSSVLIDTGVNVLSKHIESLIATFPKISSISIGVPGSVDNGR
IFYIPGYEKFQNFNLKSHLENLFSIPVVIENDMNAAVLGYYKNTGNYDNSSLVYLYSGQNGPGAGIMINGDVVRGSTFFS
GEVSFVPQYDNKNFLQALRSEDSNNPEEYNIDAITRLIATCIAIINPHAFIFCDDEVNQFVIDQIVKTCPQYIPAEHIPK
ITVSNWKEDYLYGLKSLGLDLMITRTNKEN

Specific function: Transcriptional repressor of xylose-utilizing enzymes [H]

COG id: COG1940

COG function: function code KG; Transcriptional regulator/sugar kinase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ROK (nagC/xylR) family [H]

Homologues:

Organism=Escherichia coli, GI1786891, Length=222, Percent_Identity=22.0720720720721, Blast_Score=66, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000835
- InterPro:   IPR000600
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01047 MarR; PF00480 ROK [H]

EC number: NA

Molecular weight: Translated: 39117; Mature: 39117

Theoretical pI: Translated: 4.89; Mature: 4.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLIKVVSDLSEQFVTQKSIKETILRGIRKVLLERGSATKVELSNTLEISFPTISKFIEKM
CEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCEEEEECHHHHHHHHHH
KQDGEVTLAGLDDSSGGRRAKRYEYNPEYMLGLAIFLEKNETNYTIFNCLGEVKEQGSTS
HCCCCEEEEECCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCEEHHHHHHHHHHCCCCC
SVLIDTGVNVLSKHIESLIATFPKISSISIGVPGSVDNGRIFYIPGYEKFQNFNLKSHLE
EEEEECCHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCEEEEECCHHHHHCCCHHHHHH
NLFSIPVVIENDMNAAVLGYYKNTGNYDNSSLVYLYSGQNGPGAGIMINGDVVRGSTFFS
HHHCCCEEEECCCCEEEEEEECCCCCCCCCEEEEEEECCCCCCCEEEEECCEEECCEEEC
GEVSFVPQYDNKNFLQALRSEDSNNPEEYNIDAITRLIATCIAIINPHAFIFCDDEVNQF
CEEEEEECCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCHHHH
VIDQIVKTCPQYIPAEHIPKITVSNWKEDYLYGLKSLGLDLMITRTNKEN
HHHHHHHHCHHHCCHHHCCCCEECCCHHHHHHHHHHCCEEEEEEECCCCC
>Mature Secondary Structure
MLIKVVSDLSEQFVTQKSIKETILRGIRKVLLERGSATKVELSNTLEISFPTISKFIEKM
CEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCEEEEECHHHHHHHHHH
KQDGEVTLAGLDDSSGGRRAKRYEYNPEYMLGLAIFLEKNETNYTIFNCLGEVKEQGSTS
HCCCCEEEEECCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCEEHHHHHHHHHHCCCCC
SVLIDTGVNVLSKHIESLIATFPKISSISIGVPGSVDNGRIFYIPGYEKFQNFNLKSHLE
EEEEECCHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCEEEEECCHHHHHCCCHHHHHH
NLFSIPVVIENDMNAAVLGYYKNTGNYDNSSLVYLYSGQNGPGAGIMINGDVVRGSTFFS
HHHCCCEEEECCCCEEEEEEECCCCCCCCCEEEEEEECCCCCCCEEEEECCEEECCEEEC
GEVSFVPQYDNKNFLQALRSEDSNNPEEYNIDAITRLIATCIAIINPHAFIFCDDEVNQF
CEEEEEECCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCHHHH
VIDQIVKTCPQYIPAEHIPKITVSNWKEDYLYGLKSLGLDLMITRTNKEN
HHHHHHHHCHHHCCHHHCCCCEECCCHHHHHHHHHHCCEEEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8920183 [H]