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The map label for this gene is 49476037

Identifier: 49476037

GI number: 49476037

Start: 1551959

End: 1552318

Strand: Reverse

Name: 49476037

Synonym: BH13560

Alternate gene names: NA

Gene position: 1552318-1551959 (Counterclockwise)

Preceding gene: 49476038

Following gene: 49476035

Centisome position: 80.39

GC content: 36.67

Gene sequence:

>360_bases
ATGCAAGCGAGAAATCTTCGTCAAGACAAAAATCTTCATAATGACATTTTTGTTGGTAAAAAAATTCGTTTTCGGCGAAA
AATGCTGAAAATGTCTCAAAAAACATTAGCTGACCACTTGAAGGTCAGCCCTCAACAAATTCAAAAATATGAAACAGGAT
TAAATCGTGTGAGTGCAGGGCGTTTAAAGGAAATTGCTGATATTTTGAGTGTTCCTATTGCCTTTTTTATGCTGATCTCT
TCACACAACAAGAGCACCTTATCCAGCATGATGAAATCATCTCGAGCAGAGAGGAATACCTACTGCTCAAAAGATTTCGA
ATTCTCACCTCAGTCAAACAAAGGGCAATTTTACAATTGA

Upstream 100 bases:

>100_bases
GGTGCCACAAGCACTAAAAGCAAAAAAAGCTGATTTAGGTTCAGTACTTTCAAGCTCCCGGAATACCAATGCGAGGGCGC
TCGCAACCGGCGGGGGGAAG

Downstream 100 bases:

>100_bases
TCTCTGATCAGAATGAAAGTTTTTAAAATCATATAGAGGGCGCACATTGCTTCATATTTTTGTTTATTGCATTCTTTAAT
GGGGGAATGGCTTCCCATGA

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 119; Mature: 119

Protein sequence:

>119_residues
MQARNLRQDKNLHNDIFVGKKIRFRRKMLKMSQKTLADHLKVSPQQIQKYETGLNRVSAGRLKEIADILSVPIAFFMLIS
SHNKSTLSSMMKSSRAERNTYCSKDFEFSPQSNKGQFYN

Sequences:

>Translated_119_residues
MQARNLRQDKNLHNDIFVGKKIRFRRKMLKMSQKTLADHLKVSPQQIQKYETGLNRVSAGRLKEIADILSVPIAFFMLIS
SHNKSTLSSMMKSSRAERNTYCSKDFEFSPQSNKGQFYN
>Mature_119_residues
MQARNLRQDKNLHNDIFVGKKIRFRRKMLKMSQKTLADHLKVSPQQIQKYETGLNRVSAGRLKEIADILSVPIAFFMLIS
SHNKSTLSSMMKSSRAERNTYCSKDFEFSPQSNKGQFYN

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001387
- InterPro:   IPR010982 [H]

Pfam domain/function: PF01381 HTH_3 [H]

EC number: NA

Molecular weight: Translated: 13831; Mature: 13831

Theoretical pI: Translated: 11.01; Mature: 11.01

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
5.0 %Met     (Translated Protein)
5.9 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
5.0 %Met     (Mature Protein)
5.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQARNLRQDKNLHNDIFVGKKIRFRRKMLKMSQKTLADHLKVSPQQIQKYETGLNRVSAG
CCCCCCCHHCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
RLKEIADILSVPIAFFMLISSHNKSTLSSMMKSSRAERNTYCSKDFEFSPQSNKGQFYN
HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MQARNLRQDKNLHNDIFVGKKIRFRRKMLKMSQKTLADHLKVSPQQIQKYETGLNRVSAG
CCCCCCCHHCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
RLKEIADILSVPIAFFMLISSHNKSTLSSMMKSSRAERNTYCSKDFEFSPQSNKGQFYN
HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8868435 [H]