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The map label for this gene is ybaO [H]

Identifier: 49475576

GI number: 49475576

Start: 913832

End: 914323

Strand: Reverse

Name: ybaO [H]

Synonym: BH08110

Alternate gene names: 49475576

Gene position: 914323-913832 (Counterclockwise)

Preceding gene: 49475577

Following gene: 49475572

Centisome position: 47.35

GC content: 35.16

Gene sequence:

>492_bases
ATGGATCGTCTTGATCGAAAAATTTTATATCTTTTGCAAGAAAATGCGACACTCTCTGTCGCTGATATCGCTAAAAAAGT
AGGACTTTCTACCACTCCTTGTTGGCGTAGAATTCAAAAACTTGAAGAAGATGGTGTTATTCAACGTCGTGTTGCTGTCC
TCTCTCCAGAAAAAGTAAATGCACACGTCACTGTTTTTGTTTCTATTCGTACGAACACACACAGCCAAGAATGGCTTAAG
CGCTTTTCAAAAATTGTGCAAGAATTTCGTGAAGTGATTGAATTTTATCGAATGAGTGGAGATATTGACTATTTATTGCG
TGTCGTCGTTCCCAATATTGAAGCTTATGATCTTTTTTACAAAAAATTAATTGCTAAAATTGACATCCGTGATGTTTCAT
CTTCTTTCGCAATGGAACAAATTAAATACACCACGGAATTGCCACTCAATTATATAAAACTACACGACAAAACAAGTGAA
CAAAATTCTTAA

Upstream 100 bases:

>100_bases
ACTTCTTGGTTACAAAAAAATCCATGGTTTAATGATGAGCTTATTGTATCCTTACGCAGTTTAGTGCGTAAATTTTTATA
AACTGAATACTGAGAAAAAT

Downstream 100 bases:

>100_bases
AGATTTTTTGATCTTGATAAGATCACTATTATTCTTAAATGGTAAAATGCTCTTGTTCGCACACTACCATTTGGGCATGG
GTTAAAACAGCAGCCTTAAC

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 163; Mature: 163

Protein sequence:

>163_residues
MDRLDRKILYLLQENATLSVADIAKKVGLSTTPCWRRIQKLEEDGVIQRRVAVLSPEKVNAHVTVFVSIRTNTHSQEWLK
RFSKIVQEFREVIEFYRMSGDIDYLLRVVVPNIEAYDLFYKKLIAKIDIRDVSSSFAMEQIKYTTELPLNYIKLHDKTSE
QNS

Sequences:

>Translated_163_residues
MDRLDRKILYLLQENATLSVADIAKKVGLSTTPCWRRIQKLEEDGVIQRRVAVLSPEKVNAHVTVFVSIRTNTHSQEWLK
RFSKIVQEFREVIEFYRMSGDIDYLLRVVVPNIEAYDLFYKKLIAKIDIRDVSSSFAMEQIKYTTELPLNYIKLHDKTSE
QNS
>Mature_163_residues
MDRLDRKILYLLQENATLSVADIAKKVGLSTTPCWRRIQKLEEDGVIQRRVAVLSPEKVNAHVTVFVSIRTNTHSQEWLK
RFSKIVQEFREVIEFYRMSGDIDYLLRVVVPNIEAYDLFYKKLIAKIDIRDVSSSFAMEQIKYTTELPLNYIKLHDKTSE
QNS

Specific function: Unknown

COG id: COG1522

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH asnC-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081742, Length=150, Percent_Identity=51.3333333333333, Blast_Score=171, Evalue=2e-44,
Organism=Escherichia coli, GI1787116, Length=148, Percent_Identity=37.1621621621622, Blast_Score=108, Evalue=2e-25,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011008
- InterPro:   IPR013196
- InterPro:   IPR000485
- InterPro:   IPR019885
- InterPro:   IPR019888
- InterPro:   IPR019887
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01037 AsnC_trans_reg; PF08279 HTH_11 [H]

EC number: NA

Molecular weight: Translated: 19111; Mature: 19111

Theoretical pI: Translated: 9.28; Mature: 9.28

Prosite motif: PS00519 HTH_ASNC_1 ; PS50956 HTH_ASNC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDRLDRKILYLLQENATLSVADIAKKVGLSTTPCWRRIQKLEEDGVIQRRVAVLSPEKVN
CCHHHHHHHHHHHCCCEEHHHHHHHHHCCCCCHHHHHHHHHHHCCHHHHHHHHCCCCCCC
AHVTVFVSIRTNTHSQEWLKRFSKIVQEFREVIEFYRMSGDIDYLLRVVVPNIEAYDLFY
EEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHH
KKLIAKIDIRDVSSSFAMEQIKYTTELPLNYIKLHDKTSEQNS
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCC
>Mature Secondary Structure
MDRLDRKILYLLQENATLSVADIAKKVGLSTTPCWRRIQKLEEDGVIQRRVAVLSPEKVN
CCHHHHHHHHHHHCCCEEHHHHHHHHHCCCCCHHHHHHHHHHHCCHHHHHHHHCCCCCCC
AHVTVFVSIRTNTHSQEWLKRFSKIVQEFREVIEFYRMSGDIDYLLRVVVPNIEAYDLFY
EEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHH
KKLIAKIDIRDVSSSFAMEQIKYTTELPLNYIKLHDKTSEQNS
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]