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The map label for this gene is nocM [H]

Identifier: 49475423

GI number: 49475423

Start: 743236

End: 743943

Strand: Reverse

Name: nocM [H]

Synonym: BH06350

Alternate gene names: 49475423

Gene position: 743943-743236 (Counterclockwise)

Preceding gene: 49475424

Following gene: 49475422

Centisome position: 38.53

GC content: 35.03

Gene sequence:

>708_bases
ATGATTCCAGAGTGGCTCTATTTCCTTTTCAATCCTGCTCTCTTGAACCGTTATGGACTGAAATTTATTGATGGATTTCT
TGTTACTTTTGAGCTAGTTTTTATTGCTTGCTCTCTTGGTTTTTTTCTCGGTATGTTTATTACATTTGTGCGTTTATCAA
ATAATAAGCTTTTGCGGTATTTTGCACATGCTTATGTTTATTTTTTCCGTGGATCTCCCTTATTAGCCCAACTTTTCCTT
TTTTATTATGGACTTGGTTCAATGAACAGCTTTTGGCAACAAGTTGGTTTATGGTGGTTTTTCCAAAACGCATGGTACTG
CTGTATTTTCATTTTTGCACTTAATTCCGCTGCTTATCAATCTGAAATCTTTAAAGGAAGTTTTTTATCAGTAAAAGCTG
GACAAATTGAAGCATCAAAAGCTCTAGGGCTAAGCAGCTCTACAACATTTTTTAAAATTATTCTTCCGCAAGCAATGGTT
GTAGCGTTACGTCCCCTAGGAAATGAATTTATTTTAATGATTAAATCCAGTGCCATTGCCTCACTTATTACTATTTATGA
TTTAATGGGGATTGCTAAACTCACTTATTCACGTACATTTGATTTTCAAGTTTATATTTGGGTTGCTCTTATCTATCTTC
TTGTCGTTGCCCTTGTTCATCGTTTTATCATCGCGATTGAACGCCACCTCACCCGATATTTACGATAA

Upstream 100 bases:

>100_bases
GCATGTTTACTCTATTTATTATTTTCAGCGTTTTTTTCCGCAATCCTACATTATCTTGAAACACGCACTCAACTAGGATA
TCAGAAGGTGTTAGTCTGAG

Downstream 100 bases:

>100_bases
ACAAAAATGATCAGAAAAATTTTTACCACTAAAATATTAAATTAATCAATTTATTCATCAATGAAAGAATATAAAAGATG
AATTTGAAAAATAATAAACT

Product: ABC transporter, permease protein

Products: ADP; phosphate; L-arginine [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 235; Mature: 235

Protein sequence:

>235_residues
MIPEWLYFLFNPALLNRYGLKFIDGFLVTFELVFIACSLGFFLGMFITFVRLSNNKLLRYFAHAYVYFFRGSPLLAQLFL
FYYGLGSMNSFWQQVGLWWFFQNAWYCCIFIFALNSAAYQSEIFKGSFLSVKAGQIEASKALGLSSSTTFFKIILPQAMV
VALRPLGNEFILMIKSSAIASLITIYDLMGIAKLTYSRTFDFQVYIWVALIYLLVVALVHRFIIAIERHLTRYLR

Sequences:

>Translated_235_residues
MIPEWLYFLFNPALLNRYGLKFIDGFLVTFELVFIACSLGFFLGMFITFVRLSNNKLLRYFAHAYVYFFRGSPLLAQLFL
FYYGLGSMNSFWQQVGLWWFFQNAWYCCIFIFALNSAAYQSEIFKGSFLSVKAGQIEASKALGLSSSTTFFKIILPQAMV
VALRPLGNEFILMIKSSAIASLITIYDLMGIAKLTYSRTFDFQVYIWVALIYLLVVALVHRFIIAIERHLTRYLR
>Mature_235_residues
MIPEWLYFLFNPALLNRYGLKFIDGFLVTFELVFIACSLGFFLGMFITFVRLSNNKLLRYFAHAYVYFFRGSPLLAQLFL
FYYGLGSMNSFWQQVGLWWFFQNAWYCCIFIFALNSAAYQSEIFKGSFLSVKAGQIEASKALGLSSSTTFFKIILPQAMV
VALRPLGNEFILMIKSSAIASLITIYDLMGIAKLTYSRTFDFQVYIWVALIYLLVVALVHRFIIAIERHLTRYLR

Specific function: Component of the nopaline active transport system probably consisting of four subunits:Q, M, P and T. This system is also capable of transporting octopine provided that catabolic functions are induced with nopaline [H]

COG id: COG4160

COG function: function code E; ABC-type arginine/histidine transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787086, Length=209, Percent_Identity=31.5789473684211, Blast_Score=124, Evalue=8e-30,
Organism=Escherichia coli, GI1788645, Length=198, Percent_Identity=34.8484848484849, Blast_Score=114, Evalue=5e-27,
Organism=Escherichia coli, GI1788226, Length=197, Percent_Identity=34.5177664974619, Blast_Score=112, Evalue=2e-26,
Organism=Escherichia coli, GI1788646, Length=209, Percent_Identity=28.7081339712919, Blast_Score=92, Evalue=3e-20,
Organism=Escherichia coli, GI1787087, Length=223, Percent_Identity=29.5964125560538, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI1786874, Length=221, Percent_Identity=27.1493212669683, Blast_Score=80, Evalue=9e-17,
Organism=Escherichia coli, GI1787030, Length=216, Percent_Identity=27.3148148148148, Blast_Score=77, Evalue=8e-16,
Organism=Escherichia coli, GI1786873, Length=167, Percent_Identity=29.3413173652695, Blast_Score=65, Evalue=3e-12,
Organism=Escherichia coli, GI48994930, Length=245, Percent_Identity=26.530612244898, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010065
- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 27258; Mature: 27258

Theoretical pI: Translated: 9.78; Mature: 9.78

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIPEWLYFLFNPALLNRYGLKFIDGFLVTFELVFIACSLGFFLGMFITFVRLSNNKLLRY
CCCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
FAHAYVYFFRGSPLLAQLFLFYYGLGSMNSFWQQVGLWWFFQNAWYCCIFIFALNSAAYQ
HHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
SEIFKGSFLSVKAGQIEASKALGLSSSTTFFKIILPQAMVVALRPLGNEFILMIKSSAIA
HHHHCCCCEEEECCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHH
SLITIYDLMGIAKLTYSRTFDFQVYIWVALIYLLVVALVHRFIIAIERHLTRYLR
HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MIPEWLYFLFNPALLNRYGLKFIDGFLVTFELVFIACSLGFFLGMFITFVRLSNNKLLRY
CCCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
FAHAYVYFFRGSPLLAQLFLFYYGLGSMNSFWQQVGLWWFFQNAWYCCIFIFALNSAAYQ
HHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
SEIFKGSFLSVKAGQIEASKALGLSSSTTFFKIILPQAMVVALRPLGNEFILMIKSSAIA
HHHHCCCCEEEECCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHH
SLITIYDLMGIAKLTYSRTFDFQVYIWVALIYLLVVALVHRFIIAIERHLTRYLR
HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; L-arginine [Periplasm]; H2O [C]

Specific reaction: ATP + L-arginine [Periplasm] + H2O = ADP + phosphate + L-arginine [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1732218; 11743193; 11743194 [H]