Click here to switch to the map view.

The map label for this gene is yusT [H]

Identifier: 49186302

GI number: 49186302

Start: 3263570

End: 3264421

Strand: Direct

Name: yusT [H]

Synonym: BAS3297

Alternate gene names: 49186302

Gene position: 3263570-3264421 (Clockwise)

Preceding gene: 49186300

Following gene: 49186303

Centisome position: 62.42

GC content: 34.62

Gene sequence:

>852_bases
GTGGACATAAAAGATTTAACTGTATTTTACGAAGTCGCGAAGGAAAATAATATTTCTCACGCAGCGAAAAATTTGAATTA
TGTACAATCAGGCGTAACAATGCGTATGAAACAACTAGAAAATGAATTAGGCGTGCCCTTATTTTACCGAAACGGAAAAG
GTGTAACTTTAACTTCTAACGGTGAAATTTTATTAACGTACGCCAAACAAATTATCCACTTAATGGATCAATCTATAAAA
GCGGTTCAAAGTAATGGAACTGAGCCAAAAGGTACTTTGAAAATTGGATGTACAGAATCTACAACTGCAGTAAGGCTCCC
CTCTATATTAACGACCTACTATGAGAAGTACCCAGAAGTCGAATTGATTTTAGAAACAAATACGACCGAACAACTAATTA
AGCTTGTATTAGATCGAAAACTAGACGGAGCGTTTATAGCTGGCTCTACTCAGCATAATGAACTTCATTCAAATGTATTT
CATGAAGAAGAATTAGTTCTCATTAGTAAAAAAACTTTATCCTCTCTTAAAGACATAGAAGATATGAATTTACTTGCCTT
TAGTCACGGTTGCTATTATAGAAGTTTATTAGAAGACTGGCTTCAAGAAGAAGACATCTCGCCTAAACGAGTATTAGAGT
TCGGAACAATTGAAGCGATACTTGCATGTGTAAAATCAAGTATGGGCGTAGCGATTATGATGAAATCAATTTTAAAGGGG
CATGAACATGACGTATCATTCAATCCTTTACCAAATAGCTTCAATAAAGTTCCTACTACTTTCATTACTAGAAACGATAT
ATTTCGCTCAGCTGCATTACAAAAATTTATGGAGGTAACTCACAATGCATGA

Upstream 100 bases:

>100_bases
TCCATCCTCTTCCATTGTATGAAAGTTCTGATATCATATAAAATAAAGATTCATCATATAATCCATCAAAAAAATTGATA
TCTTTTTGGAGGGATGATAC

Downstream 100 bases:

>100_bases
AAAGAAAATACGTGGGATGAAACGAAAAACAAACGCTATGATAAAACGAATTGAGGAACATACAAAAATGTTCCCTTCTA
CTTTCTATAACGATGAATAT

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 283; Mature: 283

Protein sequence:

>283_residues
MDIKDLTVFYEVAKENNISHAAKNLNYVQSGVTMRMKQLENELGVPLFYRNGKGVTLTSNGEILLTYAKQIIHLMDQSIK
AVQSNGTEPKGTLKIGCTESTTAVRLPSILTTYYEKYPEVELILETNTTEQLIKLVLDRKLDGAFIAGSTQHNELHSNVF
HEEELVLISKKTLSSLKDIEDMNLLAFSHGCYYRSLLEDWLQEEDISPKRVLEFGTIEAILACVKSSMGVAIMMKSILKG
HEHDVSFNPLPNSFNKVPTTFITRNDIFRSAALQKFMEVTHNA

Sequences:

>Translated_283_residues
MDIKDLTVFYEVAKENNISHAAKNLNYVQSGVTMRMKQLENELGVPLFYRNGKGVTLTSNGEILLTYAKQIIHLMDQSIK
AVQSNGTEPKGTLKIGCTESTTAVRLPSILTTYYEKYPEVELILETNTTEQLIKLVLDRKLDGAFIAGSTQHNELHSNVF
HEEELVLISKKTLSSLKDIEDMNLLAFSHGCYYRSLLEDWLQEEDISPKRVLEFGTIEAILACVKSSMGVAIMMKSILKG
HEHDVSFNPLPNSFNKVPTTFITRNDIFRSAALQKFMEVTHNA
>Mature_283_residues
MDIKDLTVFYEVAKENNISHAAKNLNYVQSGVTMRMKQLENELGVPLFYRNGKGVTLTSNGEILLTYAKQIIHLMDQSIK
AVQSNGTEPKGTLKIGCTESTTAVRLPSILTTYYEKYPEVELILETNTTEQLIKLVLDRKLDGAFIAGSTQHNELHSNVF
HEEELVLISKKTLSSLKDIEDMNLLAFSHGCYYRSLLEDWLQEEDISPKRVLEFGTIEAILACVKSSMGVAIMMKSILKG
HEHDVSFNPLPNSFNKVPTTFITRNDIFRSAALQKFMEVTHNA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787806, Length=285, Percent_Identity=31.2280701754386, Blast_Score=163, Evalue=1e-41,
Organism=Escherichia coli, GI157672245, Length=284, Percent_Identity=21.4788732394366, Blast_Score=95, Evalue=4e-21,
Organism=Escherichia coli, GI87082132, Length=240, Percent_Identity=24.5833333333333, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI1788481, Length=243, Percent_Identity=24.6913580246914, Blast_Score=88, Evalue=8e-19,
Organism=Escherichia coli, GI1788297, Length=242, Percent_Identity=26.0330578512397, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1787530, Length=247, Percent_Identity=24.6963562753036, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI2367136, Length=266, Percent_Identity=23.3082706766917, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1790208, Length=256, Percent_Identity=26.171875, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1787601, Length=234, Percent_Identity=23.5042735042735, Blast_Score=74, Evalue=8e-15,
Organism=Escherichia coli, GI1787879, Length=261, Percent_Identity=24.904214559387, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1788296, Length=247, Percent_Identity=25.5060728744939, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1788748, Length=238, Percent_Identity=20.1680672268908, Blast_Score=72, Evalue=6e-14,
Organism=Escherichia coli, GI145693105, Length=289, Percent_Identity=21.1072664359862, Blast_Score=71, Evalue=9e-14,
Organism=Escherichia coli, GI1786401, Length=189, Percent_Identity=27.5132275132275, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1789506, Length=225, Percent_Identity=25.3333333333333, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI48994962, Length=193, Percent_Identity=29.0155440414508, Blast_Score=68, Evalue=6e-13,
Organism=Escherichia coli, GI1787589, Length=123, Percent_Identity=28.4552845528455, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1790399, Length=147, Percent_Identity=26.530612244898, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1788626, Length=265, Percent_Identity=24.1509433962264, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1790262, Length=253, Percent_Identity=25.296442687747, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1789440, Length=139, Percent_Identity=28.7769784172662, Blast_Score=66, Evalue=3e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 31892; Mature: 31892

Theoretical pI: Translated: 6.24; Mature: 6.24

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDIKDLTVFYEVAKENNISHAAKNLNYVQSGVTMRMKQLENELGVPLFYRNGKGVTLTSN
CCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCEEEEECC
GEILLTYAKQIIHLMDQSIKAVQSNGTEPKGTLKIGCTESTTAVRLPSILTTYYEKYPEV
CCEEHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCE
ELILETNTTEQLIKLVLDRKLDGAFIAGSTQHNELHSNVFHEEELVLISKKTLSSLKDIE
EEEEECCCHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHCCCCCEEEEEHHHHHHHHHHC
DMNLLAFSHGCYYRSLLEDWLQEEDISPKRVLEFGTIEAILACVKSSMGVAIMMKSILKG
CCCEEEECCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCC
HEHDVSFNPLPNSFNKVPTTFITRNDIFRSAALQKFMEVTHNA
CCCCCCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MDIKDLTVFYEVAKENNISHAAKNLNYVQSGVTMRMKQLENELGVPLFYRNGKGVTLTSN
CCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCEEEEECC
GEILLTYAKQIIHLMDQSIKAVQSNGTEPKGTLKIGCTESTTAVRLPSILTTYYEKYPEV
CCEEHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCE
ELILETNTTEQLIKLVLDRKLDGAFIAGSTQHNELHSNVFHEEELVLISKKTLSSLKDIE
EEEEECCCHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHCCCCCEEEEEHHHHHHHHHHC
DMNLLAFSHGCYYRSLLEDWLQEEDISPKRVLEFGTIEAILACVKSSMGVAIMMKSILKG
CCCEEEECCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCC
HEHDVSFNPLPNSFNKVPTTFITRNDIFRSAALQKFMEVTHNA
CCCCCCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]