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The map label for this gene is ytbD [H]

Identifier: 49186199

GI number: 49186199

Start: 3171994

End: 3173241

Strand: Reverse

Name: ytbD [H]

Synonym: BAS3194

Alternate gene names: 49186199

Gene position: 3173241-3171994 (Counterclockwise)

Preceding gene: 49186200

Following gene: 49186198

Centisome position: 60.69

GC content: 37.1

Gene sequence:

>1248_bases
ATGATAGGAATTATAGGGAAGAGGGGAAATCAATTGAATTCATATACAGCATCGTCTTCAGAAGTTCAGACGAATCGAAG
AAGTATATTTGCGTTATTAGCGCTAGCAATTAGTGCGTTCGGGATTGGGACAACTGAATTTGTTAGTGTCGGTTTATTAC
CATCTATTTCGAAAGATTTACATGTGTCGGTGACAACAGCTGGTTTAACAGTTTCTTTATATGCGTTAGGAGTAGCATTT
GGTGCTCCAGTATTAACGTCGTTAACAGCTAATATGTCACGAAAAACGTTATTAATGTGGATTATGATTATTTTCATTAT
TGGTAACGGAATTGCGGCTGTCGCAACAAGCTTCACTGTATTACTTATTGCGCGAATTGTGTCTGCACTTTCGCATGGTG
TGTTTATGTCAATTGGTTCAACGATTGCTGCGGCACTCGTACCAGAAAATAAACGTGCTAGCGCGATTGCGATTATGTTT
ACTGGCGTAACAGTCGCAACTATTACAGGTGCACCAATTGGAACATTTATCGGTCAACAATTTGGCTGGAGAACATCATT
TTTAGCAATTGTAGTCATTGGAATTATTGCTTTAATCGCAAATAGTATTCTCATTCCATCTAATATGAAAAAAGGTACGT
CTGTATCATTCCGCGATCAATTTAAACTGGTTACGAACGGAAGACTGTTACTTGTTTTCATTATTACTGCACTTGGATAC
GGCGGTACATTCGTAACATTTACGTATTTATCTCCGTTATTACAAGAAGTAACAGGATTTAAAGCTAATACGGTTACGAT
CATTTTATTAGTATATGGAATCGCTATTGCAATAGGGAATGTGATTGGCGGGAAATTATCGAATCATAATCCAATTCGAG
CGCTATTTTACATGTTCTTTATTCAAGCGATTATATTATTTGTTTTAACATTTACAGCGCCATTTAAAGTAGCTGGGTTA
ATTACAATTATTTTCATGGGACTATTCGCATTTATGAATGTTCCAGGGTTACAAGTATATGTCGTAATGTTAGCTGAACG
ATTTGTACCGAGTGCTGTCGATGTTGCATCGGCAATTAATATTGCGGCTTTTAATGCTGGGATTGCTCTTGGTGCTTATT
TAGGTGGTATTGTAACGAATTCGTTAGGGTTAATTCATACGGCTTGGGTAGGCGGCATTATGGTAGTAGGTGCTGTTATT
TTAACAGCATGGAGTATGTCATTAGAAAAACGAGATCAAGTAAAATAA

Upstream 100 bases:

>100_bases
AAGTGCGTTCTTTAAAAAGAGAATGAAACCATTCATAATAGCGTTTGTAGAGATTAAATATATGTTTTGAAAGATAAAAG
GGCCTTTTTATCGCGCTATT

Downstream 100 bases:

>100_bases
AAGGAGAGAAAATATAATGAAAAACTTACAAAGTACAACAAAATTGCATAACGGTGTAGAAATGCCTTGGTTCGGTTTAG
GCGTATTTAAAGTAGAAGAA

Product: major facilitator family transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 415; Mature: 415

Protein sequence:

>415_residues
MIGIIGKRGNQLNSYTASSSEVQTNRRSIFALLALAISAFGIGTTEFVSVGLLPSISKDLHVSVTTAGLTVSLYALGVAF
GAPVLTSLTANMSRKTLLMWIMIIFIIGNGIAAVATSFTVLLIARIVSALSHGVFMSIGSTIAAALVPENKRASAIAIMF
TGVTVATITGAPIGTFIGQQFGWRTSFLAIVVIGIIALIANSILIPSNMKKGTSVSFRDQFKLVTNGRLLLVFIITALGY
GGTFVTFTYLSPLLQEVTGFKANTVTIILLVYGIAIAIGNVIGGKLSNHNPIRALFYMFFIQAIILFVLTFTAPFKVAGL
ITIIFMGLFAFMNVPGLQVYVVMLAERFVPSAVDVASAINIAAFNAGIALGAYLGGIVTNSLGLIHTAWVGGIMVVGAVI
LTAWSMSLEKRDQVK

Sequences:

>Translated_415_residues
MIGIIGKRGNQLNSYTASSSEVQTNRRSIFALLALAISAFGIGTTEFVSVGLLPSISKDLHVSVTTAGLTVSLYALGVAF
GAPVLTSLTANMSRKTLLMWIMIIFIIGNGIAAVATSFTVLLIARIVSALSHGVFMSIGSTIAAALVPENKRASAIAIMF
TGVTVATITGAPIGTFIGQQFGWRTSFLAIVVIGIIALIANSILIPSNMKKGTSVSFRDQFKLVTNGRLLLVFIITALGY
GGTFVTFTYLSPLLQEVTGFKANTVTIILLVYGIAIAIGNVIGGKLSNHNPIRALFYMFFIQAIILFVLTFTAPFKVAGL
ITIIFMGLFAFMNVPGLQVYVVMLAERFVPSAVDVASAINIAAFNAGIALGAYLGGIVTNSLGLIHTAWVGGIMVVGAVI
LTAWSMSLEKRDQVK
>Mature_415_residues
MIGIIGKRGNQLNSYTASSSEVQTNRRSIFALLALAISAFGIGTTEFVSVGLLPSISKDLHVSVTTAGLTVSLYALGVAF
GAPVLTSLTANMSRKTLLMWIMIIFIIGNGIAAVATSFTVLLIARIVSALSHGVFMSIGSTIAAALVPENKRASAIAIMF
TGVTVATITGAPIGTFIGQQFGWRTSFLAIVVIGIIALIANSILIPSNMKKGTSVSFRDQFKLVTNGRLLLVFIITALGY
GGTFVTFTYLSPLLQEVTGFKANTVTIILLVYGIAIAIGNVIGGKLSNHNPIRALFYMFFIQAIILFVLTFTAPFKVAGL
ITIIFMGLFAFMNVPGLQVYVVMLAERFVPSAVDVASAINIAAFNAGIALGAYLGGIVTNSLGLIHTAWVGGIMVVGAVI
LTAWSMSLEKRDQVK

Specific function: Unknown

COG id: COG2814

COG function: function code G; Arabinose efflux permease

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the major facilitator superfamily [H]

Homologues:

Organism=Escherichia coli, GI1787947, Length=335, Percent_Identity=37.3134328358209, Blast_Score=224, Evalue=9e-60,
Organism=Escherichia coli, GI1786595, Length=359, Percent_Identity=31.4763231197772, Blast_Score=180, Evalue=2e-46,
Organism=Escherichia coli, GI1787808, Length=390, Percent_Identity=32.5641025641026, Blast_Score=152, Evalue=6e-38,
Organism=Escherichia coli, GI145693198, Length=360, Percent_Identity=26.6666666666667, Blast_Score=114, Evalue=1e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR011701
- InterPro:   IPR016196 [H]

Pfam domain/function: PF07690 MFS_1 [H]

EC number: NA

Molecular weight: Translated: 43744; Mature: 43744

Theoretical pI: Translated: 10.81; Mature: 10.81

Prosite motif: PS00589 PTS_HPR_SER ; PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIGIIGKRGNQLNSYTASSSEVQTNRRSIFALLALAISAFGIGTTEFVSVGLLPSISKDL
CEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCC
HVSVTTAGLTVSLYALGVAFGAPVLTSLTANMSRKTLLMWIMIIFIIGNGIAAVATSFTV
EEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHH
LLIARIVSALSHGVFMSIGSTIAAALVPENKRASAIAIMFTGVTVATITGAPIGTFIGQQ
HHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCCCEEEEEEECEEEEEECCCCHHHHHHHH
FGWRTSFLAIVVIGIIALIANSILIPSNMKKGTSVSFRDQFKLVTNGRLLLVFIITALGY
CCHHHHHHHHHHHHHHHHHHCCEECCCCCCCCCCCCHHHCEEEEECCCCHHHHHHHHHCC
GGTFVTFTYLSPLLQEVTGFKANTVTIILLVYGIAIAIGNVIGGKLSNHNPIRALFYMFF
CCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
IQAIILFVLTFTAPFKVAGLITIIFMGLFAFMNVPGLQVYVVMLAERFVPSAVDVASAIN
HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHHH
IAAFNAGIALGAYLGGIVTNSLGLIHTAWVGGIMVVGAVILTAWSMSLEKRDQVK
HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MIGIIGKRGNQLNSYTASSSEVQTNRRSIFALLALAISAFGIGTTEFVSVGLLPSISKDL
CEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCC
HVSVTTAGLTVSLYALGVAFGAPVLTSLTANMSRKTLLMWIMIIFIIGNGIAAVATSFTV
EEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHH
LLIARIVSALSHGVFMSIGSTIAAALVPENKRASAIAIMFTGVTVATITGAPIGTFIGQQ
HHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCCCEEEEEEECEEEEEECCCCHHHHHHHH
FGWRTSFLAIVVIGIIALIANSILIPSNMKKGTSVSFRDQFKLVTNGRLLLVFIITALGY
CCHHHHHHHHHHHHHHHHHHCCEECCCCCCCCCCCCHHHCEEEEECCCCHHHHHHHHHCC
GGTFVTFTYLSPLLQEVTGFKANTVTIILLVYGIAIAIGNVIGGKLSNHNPIRALFYMFF
CCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
IQAIILFVLTFTAPFKVAGLITIIFMGLFAFMNVPGLQVYVVMLAERFVPSAVDVASAIN
HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHHH
IAAFNAGIALGAYLGGIVTNSLGLIHTAWVGGIMVVGAVILTAWSMSLEKRDQVK
HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377 [H]