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The map label for this gene is yndD [H]

Identifier: 49185934

GI number: 49185934

Start: 2896508

End: 2897821

Strand: Reverse

Name: yndD [H]

Synonym: BAS2928

Alternate gene names: 49185934

Gene position: 2897821-2896508 (Counterclockwise)

Preceding gene: 49185935

Following gene: 49185933

Centisome position: 55.42

GC content: 36.99

Gene sequence:

>1314_bases
ATGAAATTACTAATGGATGATTTTTCTGACGAATATAAAAATGAATCTTATTATGTGGAGGGGACTGTTTCAAAAGAATA
TATTAAAAATAAAGTTCTTACAATTAGTGAAGTAGCAGAAGTTCATTACATAAAAGATTTGATACCCAAAGTATTGATAG
GTTCAACAGCTCTTTTAATTGATGGTTTAGCAGATGTGTTTATTCTTGGTACAACAAAAGCAAATAAACGAAACATGGAA
GAACCAGTATCGGAGGCATTAGTCAGAGGTCCACGGGTCGGTTTTACTGAAGTATTAAGTGATAATACTTCACTTTTGCG
ACGGCATTGTGCGGATGAGAACTTATCATTAGTGAAGCTACCAGTAGGAGAACGTGCAAAGAAAGAGCTAGTTGTCGCAT
TTATTAAAGATCTTGCTAGTACAGAATTGGTGGAAGAAATAAAAAATAGAATTCAGAAAATTGACATAGACAGTGTACTC
GAATCTGGTTACATAGAGCAACTCATTGAAGATAATTATCTCAGTCCTTTTCCGCAGATTCAAAATACAGAACGACCTGA
TCGTGTTATTAGTGCTTTGATGGAAGGTCGAGTAGCTATTTTGTTAGATGGAACACCATTTGTTTTAATTGCTCCTGTTA
CATTTAGTATGCTACTGCAATCACCAGAAGATTATTATGAAAGGTGGCTTCCTGGTACGCTTCTCCGCTTATTACGCTTC
ATGACAGCTTTTGTTTCATTATTTGCTCCAGCACTGTATATTTCTTTCATTTCATTTCATCCAGGATTAATTCCCACTAA
GCTCGCTATTTCTATTCTCGGATCGAGAGAAGGAGTTCCTTTTCCCGCTTTAATAGAAGCGTTAATTATGGAAGTAGCTA
TCGAAGTTTTACGAGAAGCAGGTTTACGTCTGCCTAAACCAATTGGACCTGCAATGGGAATTGTGGGCGGTTTAATAATT
GGTCAGGCTGCCGTAGAAGCAGGAATTGTTAGTCCAATAATGGTTATCGTTGTTGCGGTAACAGCTATTTCTTCTTTTAC
TATCCCGCAATATAGTGTGGGAATTACGTTACGCATTCTTCGTTTTGTAGCTATGTTTTGTGCTGCGATATTTGGCTTGT
ATGGAGTTATTCTCTTCTTTCTTTTACTTTGCAGTCATTTAGTGAAACTGAAAAGTTTTGGCGTTCCTTATACTAGCCCT
GCTGTTCCGTACCGATTTAGTGACTGGAAAGATTTTATGGTTCGCATGCCATTAAAAATAATGAGACGTCGACCGAAAAT
AATGCATACCAAAAAAACTAACCGCAAAAGGTAG

Upstream 100 bases:

>100_bases
CGTTCGCTTTCGGGAGTTTAATATTGGACGCACAGATATTCAGGCTGGAATCATTTTTGTTGATGGTCTATCAGATAAAG
AGATAATTGACAAACATATT

Downstream 100 bases:

>100_bases
CTGATGACGAAAGGAAGTGGGGTTCAGTGATTACTATATCTAAAGACCGAATAACAACTGCACAAGCAGTTGTTATTATT
GTAAATTACATACTGGGAAC

Product: spore germination protein GerAA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 437; Mature: 437

Protein sequence:

>437_residues
MKLLMDDFSDEYKNESYYVEGTVSKEYIKNKVLTISEVAEVHYIKDLIPKVLIGSTALLIDGLADVFILGTTKANKRNME
EPVSEALVRGPRVGFTEVLSDNTSLLRRHCADENLSLVKLPVGERAKKELVVAFIKDLASTELVEEIKNRIQKIDIDSVL
ESGYIEQLIEDNYLSPFPQIQNTERPDRVISALMEGRVAILLDGTPFVLIAPVTFSMLLQSPEDYYERWLPGTLLRLLRF
MTAFVSLFAPALYISFISFHPGLIPTKLAISILGSREGVPFPALIEALIMEVAIEVLREAGLRLPKPIGPAMGIVGGLII
GQAAVEAGIVSPIMVIVVAVTAISSFTIPQYSVGITLRILRFVAMFCAAIFGLYGVILFFLLLCSHLVKLKSFGVPYTSP
AVPYRFSDWKDFMVRMPLKIMRRRPKIMHTKKTNRKR

Sequences:

>Translated_437_residues
MKLLMDDFSDEYKNESYYVEGTVSKEYIKNKVLTISEVAEVHYIKDLIPKVLIGSTALLIDGLADVFILGTTKANKRNME
EPVSEALVRGPRVGFTEVLSDNTSLLRRHCADENLSLVKLPVGERAKKELVVAFIKDLASTELVEEIKNRIQKIDIDSVL
ESGYIEQLIEDNYLSPFPQIQNTERPDRVISALMEGRVAILLDGTPFVLIAPVTFSMLLQSPEDYYERWLPGTLLRLLRF
MTAFVSLFAPALYISFISFHPGLIPTKLAISILGSREGVPFPALIEALIMEVAIEVLREAGLRLPKPIGPAMGIVGGLII
GQAAVEAGIVSPIMVIVVAVTAISSFTIPQYSVGITLRILRFVAMFCAAIFGLYGVILFFLLLCSHLVKLKSFGVPYTSP
AVPYRFSDWKDFMVRMPLKIMRRRPKIMHTKKTNRKR
>Mature_437_residues
MKLLMDDFSDEYKNESYYVEGTVSKEYIKNKVLTISEVAEVHYIKDLIPKVLIGSTALLIDGLADVFILGTTKANKRNME
EPVSEALVRGPRVGFTEVLSDNTSLLRRHCADENLSLVKLPVGERAKKELVVAFIKDLASTELVEEIKNRIQKIDIDSVL
ESGYIEQLIEDNYLSPFPQIQNTERPDRVISALMEGRVAILLDGTPFVLIAPVTFSMLLQSPEDYYERWLPGTLLRLLRF
MTAFVSLFAPALYISFISFHPGLIPTKLAISILGSREGVPFPALIEALIMEVAIEVLREAGLRLPKPIGPAMGIVGGLII
GQAAVEAGIVSPIMVIVVAVTAISSFTIPQYSVGITLRILRFVAMFCAAIFGLYGVILFFLLLCSHLVKLKSFGVPYTSP
AVPYRFSDWKDFMVRMPLKIMRRRPKIMHTKKTNRKR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gerABKA family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004995 [H]

Pfam domain/function: PF03323 GerA [H]

EC number: NA

Molecular weight: Translated: 48841; Mature: 48841

Theoretical pI: Translated: 8.91; Mature: 8.91

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLLMDDFSDEYKNESYYVEGTVSKEYIKNKVLTISEVAEVHYIKDLIPKVLIGSTALLI
CCCHHHHHHHHHCCCCEEEEECCHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCHHHHH
DGLADVFILGTTKANKRNMEEPVSEALVRGPRVGFTEVLSDNTSLLRRHCADENLSLVKL
HHHHHHEEEECCCCCCCCHHHHHHHHHHCCCCCCHHHHHCCCHHHHHHHHCCCCCEEEEE
PVGERAKKELVVAFIKDLASTELVEEIKNRIQKIDIDSVLESGYIEQLIEDNYLSPFPQI
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCC
QNTERPDRVISALMEGRVAILLDGTPFVLIAPVTFSMLLQSPEDYYERWLPGTLLRLLRF
CCCCCHHHHHHHHHCCCEEEEECCCCEEEEHHHHHHHHHCCCHHHHHHCCCHHHHHHHHH
MTAFVSLFAPALYISFISFHPGLIPTKLAISILGSREGVPFPALIEALIMEVAIEVLREA
HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHC
GLRLPKPIGPAMGIVGGLIIGQAAVEAGIVSPIMVIVVAVTAISSFTIPQYSVGITLRIL
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
RFVAMFCAAIFGLYGVILFFLLLCSHLVKLKSFGVPYTSPAVPYRFSDWKDFMVRMPLKI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCHHH
MRRRPKIMHTKKTNRKR
HHCCCHHHCCCCCCCCC
>Mature Secondary Structure
MKLLMDDFSDEYKNESYYVEGTVSKEYIKNKVLTISEVAEVHYIKDLIPKVLIGSTALLI
CCCHHHHHHHHHCCCCEEEEECCHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCHHHHH
DGLADVFILGTTKANKRNMEEPVSEALVRGPRVGFTEVLSDNTSLLRRHCADENLSLVKL
HHHHHHEEEECCCCCCCCHHHHHHHHHHCCCCCCHHHHHCCCHHHHHHHHCCCCCEEEEE
PVGERAKKELVVAFIKDLASTELVEEIKNRIQKIDIDSVLESGYIEQLIEDNYLSPFPQI
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCC
QNTERPDRVISALMEGRVAILLDGTPFVLIAPVTFSMLLQSPEDYYERWLPGTLLRLLRF
CCCCCHHHHHHHHHCCCEEEEECCCCEEEEHHHHHHHHHCCCHHHHHHCCCHHHHHHHHH
MTAFVSLFAPALYISFISFHPGLIPTKLAISILGSREGVPFPALIEALIMEVAIEVLREA
HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHC
GLRLPKPIGPAMGIVGGLIIGQAAVEAGIVSPIMVIVVAVTAISSFTIPQYSVGITLRIL
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
RFVAMFCAAIFGLYGVILFFLLLCSHLVKLKSFGVPYTSPAVPYRFSDWKDFMVRMPLKI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCHHH
MRRRPKIMHTKKTNRKR
HHCCCHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]