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The map label for this gene is yndF [H]

Identifier: 49185932

GI number: 49185932

Start: 2894926

End: 2895564

Strand: Reverse

Name: yndF [H]

Synonym: BAS2926

Alternate gene names: 49185932

Gene position: 2895564-2894926 (Counterclockwise)

Preceding gene: 49185933

Following gene: 49185931

Centisome position: 55.38

GC content: 36.15

Gene sequence:

>639_bases
GTGAAAAATAAATTTAATTATATGCGGTTCTATTTGGTTTTGTTATGTACGCTTTTGCTTCTATTTTTAACAGGATGTTG
GAGCAGTAAAGAAGTAGAAGAGTTGAGTTTAACTGCAGGTATAGCACTAGATAAAGGGAAGGATTCAACAATTGAGAAAG
AGGATGAGGAAGGAGGTTATCCTAAAAGAAATCTTATAACAGCAACTTATCAAATTGTCAGTTCGCAAGCACAAAGTAAA
GGAAACGGACAACAAAAACGTTATATAAATGTTTCTGAGACCGGTGATTCCATTCATCAAATTGTTCGTGAGTTTTCATT
GAAAAGAGAGAGCGCAATGTTCAGCCCACATTTAAAAAACATTGTTATTAGTGATAGTCTTGTACGTACATACAGTTTAG
AACAATTACTTGAACAGTATCTCCGTGACAATGAAGTTCGGCTTAGCTGTATGATCTTAATTAGCAAGGGTCTAGCGAAG
GAGGTACTGGAATCAAACAAAAAGGAGAAATCCCAGCATTTCGTTTGTCTGGAATTGCAGATAATCGAAAGAGAACAACA
AGGATTTTACCTCCTGTATCACTCGCTAAATTGGAAGGAAAGATGCGGTCAGGGTCCAGTTTTCTATTGCAAAATGTAA

Upstream 100 bases:

>100_bases
TGCTTAAACTGGGGGATATGCTCGGTAATGCTGCTTTATTTTTATTTGGTTTACTGCCACTGCTTCTTCTTATTATTAAG
CGATTAAAAGGAGGAGTAGT

Downstream 100 bases:

>100_bases
TCTCGATAAAAGGAGAAACGAAATTTGCAGGAGCTGCTGTAATTAAAGGGAAGACAAAAAAGTTGATGGGCTTTTTAAAT
GAACAGGAATTGGAAGGAGT

Product: spore germination protein BC, N-terminus

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 212; Mature: 212

Protein sequence:

>212_residues
MKNKFNYMRFYLVLLCTLLLLFLTGCWSSKEVEELSLTAGIALDKGKDSTIEKEDEEGGYPKRNLITATYQIVSSQAQSK
GNGQQKRYINVSETGDSIHQIVREFSLKRESAMFSPHLKNIVISDSLVRTYSLEQLLEQYLRDNEVRLSCMILISKGLAK
EVLESNKKEKSQHFVCLELQIIEREQQGFYLLYHSLNWKERCGQGPVFYCKM

Sequences:

>Translated_212_residues
MKNKFNYMRFYLVLLCTLLLLFLTGCWSSKEVEELSLTAGIALDKGKDSTIEKEDEEGGYPKRNLITATYQIVSSQAQSK
GNGQQKRYINVSETGDSIHQIVREFSLKRESAMFSPHLKNIVISDSLVRTYSLEQLLEQYLRDNEVRLSCMILISKGLAK
EVLESNKKEKSQHFVCLELQIIEREQQGFYLLYHSLNWKERCGQGPVFYCKM
>Mature_212_residues
MKNKFNYMRFYLVLLCTLLLLFLTGCWSSKEVEELSLTAGIALDKGKDSTIEKEDEEGGYPKRNLITATYQIVSSQAQSK
GNGQQKRYINVSETGDSIHQIVREFSLKRESAMFSPHLKNIVISDSLVRTYSLEQLLEQYLRDNEVRLSCMILISKGLAK
EVLESNKKEKSQHFVCLELQIIEREQQGFYLLYHSLNWKERCGQGPVFYCKM

Specific function: May be involved in spore germination [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Lipid-anchor [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gerABKC lipoprotein family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008844 [H]

Pfam domain/function: PF05504 Spore_GerAC [H]

EC number: NA

Molecular weight: Translated: 24541; Mature: 24541

Theoretical pI: Translated: 8.10; Mature: 8.10

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.8 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
2.8 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNKFNYMRFYLVLLCTLLLLFLTGCWSSKEVEELSLTAGIALDKGKDSTIEKEDEEGGY
CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCEEECCCCCCCCCCCCCCCCC
PKRNLITATYQIVSSQAQSKGNGQQKRYINVSETGDSIHQIVREFSLKRESAMFSPHLKN
CCHHHHHHHHHHHHHHHHCCCCCCCCEEEEHHCCCHHHHHHHHHHHHHHHHHHCCCHHHH
IVISDSLVRTYSLEQLLEQYLRDNEVRLSCMILISKGLAKEVLESNKKEKSQHFVCLELQ
EEHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHCCCHHHHHCEEEEEEE
IIEREQQGFYLLYHSLNWKERCGQGPVFYCKM
EEECCCCCEEEEEECCCHHHHCCCCCEEEEEC
>Mature Secondary Structure
MKNKFNYMRFYLVLLCTLLLLFLTGCWSSKEVEELSLTAGIALDKGKDSTIEKEDEEGGY
CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCEEECCCCCCCCCCCCCCCCC
PKRNLITATYQIVSSQAQSKGNGQQKRYINVSETGDSIHQIVREFSLKRESAMFSPHLKN
CCHHHHHHHHHHHHHHHHCCCCCCCCEEEEHHCCCHHHHHHHHHHHHHHHHHHCCCHHHH
IVISDSLVRTYSLEQLLEQYLRDNEVRLSCMILISKGLAKEVLESNKKEKSQHFVCLELQ
EEHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHCCCHHHHHCEEEEEEE
IIEREQQGFYLLYHSLNWKERCGQGPVFYCKM
EEECCCCCEEEEEECCCHHHHCCCCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]