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The map label for this gene is yndF [H]

Identifier: 49185931

GI number: 49185931

Start: 2894501

End: 2895040

Strand: Reverse

Name: yndF [H]

Synonym: BAS2925

Alternate gene names: 49185931

Gene position: 2895040-2894501 (Counterclockwise)

Preceding gene: 49185932

Following gene: 49185930

Centisome position: 55.37

GC content: 32.78

Gene sequence:

>540_bases
TTGTCTGGAATTGCAGATAATCGAAAGAGAACAACAAGGATTTTACCTCCTGTATCACTCGCTAAATTGGAAGGAAAGAT
GCGGTCAGGGTCCAGTTTTCTATTGCAAAATGTAATCTCGATAAAAGGAGAAACGAAATTTGCAGGAGCTGCTGTAATTA
AAGGGAAGACAAAAAAGTTGATGGGCTTTTTAAATGAACAGGAATTGGAAGGAGTAGTATGGATAAACGGAAAAAGGAAT
GGTGGTGTGGTAAAAACTTTTGATAAAGAATCAAAGAAACTCATTATATACGAAATAAAGTCAATAAAAAGCAAAATCAT
ACCACATGTTAACGGAAATAATATTTCCTTTGATGTAAACATTGAATCAGAAGGGCGTTTGTCTGAAAATTGGATGCAAT
CAGGAAAAGATTTTGAAAATGAATTTTTAAAAAGGGAAGAAAAAGCTATTGAAAAAGAAGTAAAGCACTTAGTACATCAT
GTTACAAAAAAATACAAAAAGAATATCAAGTCGATATTGCGGGTTTTGGCAACCAATTAA

Upstream 100 bases:

>100_bases
GTGACAATGAAGTTCGGCTTAGCTGTATGATCTTAATTAGCAAGGGTCTAGCGAAGGAGGTACTGGAATCAAACAAAAAG
GAGAAATCCCAGCATTTCGT

Downstream 100 bases:

>100_bases
GAATTAAACACCCGAGAACATGGGAGAAAGTCAAAAAAGATTGGGATCGAACATTTAGTAAGGTACCGATTAAATATCAT
ATAAATGTAACTATACAAGA

Product: spore germination protein BC, C-terminus

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 179; Mature: 178

Protein sequence:

>179_residues
MSGIADNRKRTTRILPPVSLAKLEGKMRSGSSFLLQNVISIKGETKFAGAAVIKGKTKKLMGFLNEQELEGVVWINGKRN
GGVVKTFDKESKKLIIYEIKSIKSKIIPHVNGNNISFDVNIESEGRLSENWMQSGKDFENEFLKREEKAIEKEVKHLVHH
VTKKYKKNIKSILRVLATN

Sequences:

>Translated_179_residues
MSGIADNRKRTTRILPPVSLAKLEGKMRSGSSFLLQNVISIKGETKFAGAAVIKGKTKKLMGFLNEQELEGVVWINGKRN
GGVVKTFDKESKKLIIYEIKSIKSKIIPHVNGNNISFDVNIESEGRLSENWMQSGKDFENEFLKREEKAIEKEVKHLVHH
VTKKYKKNIKSILRVLATN
>Mature_178_residues
SGIADNRKRTTRILPPVSLAKLEGKMRSGSSFLLQNVISIKGETKFAGAAVIKGKTKKLMGFLNEQELEGVVWINGKRNG
GVVKTFDKESKKLIIYEIKSIKSKIIPHVNGNNISFDVNIESEGRLSENWMQSGKDFENEFLKREEKAIEKEVKHLVHHV
TKKYKKNIKSILRVLATN

Specific function: May be involved in spore germination [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Lipid-anchor [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gerABKC lipoprotein family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008844 [H]

Pfam domain/function: PF05504 Spore_GerAC [H]

EC number: NA

Molecular weight: Translated: 20236; Mature: 20105

Theoretical pI: Translated: 10.72; Mature: 10.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGIADNRKRTTRILPPVSLAKLEGKMRSGSSFLLQNVISIKGETKFAGAAVIKGKTKKL
CCCCCCCCCCCEECCCCHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCEEEECCCHHHH
MGFLNEQELEGVVWINGKRNGGVVKTFDKESKKLIIYEIKSIKSKIIPHVNGNNISFDVN
HHHHCHHHCCEEEEECCCCCCCEEEEECCCCCEEEEEEHHHHHHHHCCCCCCCEEEEEEE
IESEGRLSENWMQSGKDFENEFLKREEKAIEKEVKHLVHHVTKKYKKNIKSILRVLATN
ECCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SGIADNRKRTTRILPPVSLAKLEGKMRSGSSFLLQNVISIKGETKFAGAAVIKGKTKKL
CCCCCCCCCCEECCCCHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCEEEECCCHHHH
MGFLNEQELEGVVWINGKRNGGVVKTFDKESKKLIIYEIKSIKSKIIPHVNGNNISFDVN
HHHHCHHHCCEEEEECCCCCCCEEEEECCCCCEEEEEEHHHHHHHHCCCCCCCEEEEEEE
IESEGRLSENWMQSGKDFENEFLKREEKAIEKEVKHLVHHVTKKYKKNIKSILRVLATN
ECCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]