Click here to switch to the map view.

The map label for this gene is lsrD [H]

Identifier: 49185770

GI number: 49185770

Start: 2744426

End: 2745442

Strand: Reverse

Name: lsrD [H]

Synonym: BAS2764

Alternate gene names: 49185770

Gene position: 2745442-2744426 (Counterclockwise)

Preceding gene: 49185771

Following gene: 49185769

Centisome position: 52.51

GC content: 38.25

Gene sequence:

>1017_bases
GTGGAAGGCAGAAAGGAGGATGAATCTATGAAGTATGTATACAGATGGGAAGGTGTTCTAATTGTATTGCTTCTTATAGA
ATTCATTCTCTTTAGTTTAATCAATAGTGATTTCTTAAATATTAGTAATCTCCTTTTTAGTACAAATGATTTCCTATTTA
TCGCAATTGCTGCGATACCAATGACTTTCGTTATAGTAACAGGAGGAATTGATGTATCGGTCGGCTCAATAATGGGTCTC
ACTTCGATCTTAATCGGTGTACTTTGGATGAACGGAATATCTATTTTGTTTGCTGTCATAATATCTCTAATAATTAGTTG
TTTAGCAGGCGCTTTAAACGGATTTATTATAAAAATGACAGATGTAGAACCACTCGTCGTTACACTCGGCACGATGTTTT
TATACGGAGGAATTGCACTCGTCATTTCAGGAGGGGCAGGTGCTTCTGGGTATGAAGGGATAAGTGGTTTACCTGACGCA
TTTGTACAACTGGCAAGCGGTAGTTTTATAGGAATACCAAATTTATTATGGCTACTGATCGTATTAACAGTTTTATGTGC
TGTATTATTTCACCGAACTATATACGGACGCCATGTAAAATTAACAGGTGCGAACGAAAATGCAGCAAAATACACCGGGA
TTATGACGAAGAAAGTAGTCATCATCGCTTACATGCTTTCCGGGTTAGGAGGTGGATTAGGGGGGACTTTCTTAACTGCC
TATTTCGGTTCCGCACGTGCTGATATGGGAAGTGAAACAATTTTACCAATCATTACGGCAGTCGTATTAGGCGGGACACT
TATTACAGGGGGAAAAGGAAGCATTATCGGTACTGTACTGGCGAGTATTTTCATTGGACTCATGCAGTATGGCTTGCAAA
TGACGGGTTTAACAAATGAACAATCCAACGTAGTAATTGGTATTATCCTTATTCTTTCAGTTATTATGAGACATTTCAAA
TTACATCAATTCACACTGGGGAAAAGAAAGAATTTGCATAAGGGGGAAATGTCATGA

Upstream 100 bases:

>100_bases
GCAGTTCACTCGTCTTTTTAAAAATACCAGCATTTTGGAATAATGCTATTTCAGGTTTTTTATTATTACTTATCATCATA
CTGGATAGTGTTATGAAAAA

Downstream 100 bases:

>100_bases
AGAGAAAACTAGGGATTGTATTCATTGTATGTATTTGTTTAATCGGTTTAATCGCCTGTTCTAGTCAAACCGCAGATAAG
AAAAAAGCGGATGATGTGAA

Product: ribose ABC transporter permease

Products: NA

Alternate protein names: AI-2 import system permease protein lsrD [H]

Number of amino acids: Translated: 338; Mature: 338

Protein sequence:

>338_residues
MEGRKEDESMKYVYRWEGVLIVLLLIEFILFSLINSDFLNISNLLFSTNDFLFIAIAAIPMTFVIVTGGIDVSVGSIMGL
TSILIGVLWMNGISILFAVIISLIISCLAGALNGFIIKMTDVEPLVVTLGTMFLYGGIALVISGGAGASGYEGISGLPDA
FVQLASGSFIGIPNLLWLLIVLTVLCAVLFHRTIYGRHVKLTGANENAAKYTGIMTKKVVIIAYMLSGLGGGLGGTFLTA
YFGSARADMGSETILPIITAVVLGGTLITGGKGSIIGTVLASIFIGLMQYGLQMTGLTNEQSNVVIGIILILSVIMRHFK
LHQFTLGKRKNLHKGEMS

Sequences:

>Translated_338_residues
MEGRKEDESMKYVYRWEGVLIVLLLIEFILFSLINSDFLNISNLLFSTNDFLFIAIAAIPMTFVIVTGGIDVSVGSIMGL
TSILIGVLWMNGISILFAVIISLIISCLAGALNGFIIKMTDVEPLVVTLGTMFLYGGIALVISGGAGASGYEGISGLPDA
FVQLASGSFIGIPNLLWLLIVLTVLCAVLFHRTIYGRHVKLTGANENAAKYTGIMTKKVVIIAYMLSGLGGGLGGTFLTA
YFGSARADMGSETILPIITAVVLGGTLITGGKGSIIGTVLASIFIGLMQYGLQMTGLTNEQSNVVIGIILILSVIMRHFK
LHQFTLGKRKNLHKGEMS
>Mature_338_residues
MEGRKEDESMKYVYRWEGVLIVLLLIEFILFSLINSDFLNISNLLFSTNDFLFIAIAAIPMTFVIVTGGIDVSVGSIMGL
TSILIGVLWMNGISILFAVIISLIISCLAGALNGFIIKMTDVEPLVVTLGTMFLYGGIALVISGGAGASGYEGISGLPDA
FVQLASGSFIGIPNLLWLLIVLTVLCAVLFHRTIYGRHVKLTGANENAAKYTGIMTKKVVIIAYMLSGLGGGLGGTFLTA
YFGSARADMGSETILPIITAVVLGGTLITGGKGSIIGTVLASIFIGLMQYGLQMTGLTNEQSNVVIGIILILSVIMRHFK
LHQFTLGKRKNLHKGEMS

Specific function: Part of the ABC transporter complex lsrABCD involved in autoinducer 2 (AI-2) import. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1172

COG function: function code G; Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1787794, Length=326, Percent_Identity=42.638036809816, Blast_Score=241, Evalue=5e-65,
Organism=Escherichia coli, GI1790191, Length=300, Percent_Identity=31.3333333333333, Blast_Score=123, Evalue=2e-29,
Organism=Escherichia coli, GI1788896, Length=310, Percent_Identity=30.6451612903226, Blast_Score=116, Evalue=2e-27,
Organism=Escherichia coli, GI1790524, Length=322, Percent_Identity=30.1242236024845, Blast_Score=109, Evalue=2e-25,
Organism=Escherichia coli, GI1787793, Length=305, Percent_Identity=30.1639344262295, Blast_Score=108, Evalue=6e-25,
Organism=Escherichia coli, GI87082395, Length=280, Percent_Identity=31.7857142857143, Blast_Score=105, Evalue=5e-24,
Organism=Escherichia coli, GI145693152, Length=320, Percent_Identity=28.125, Blast_Score=97, Evalue=2e-21,
Organism=Escherichia coli, GI145693214, Length=256, Percent_Identity=30.078125, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI1788471, Length=277, Percent_Identity=29.9638989169675, Blast_Score=69, Evalue=6e-13,
Organism=Escherichia coli, GI1789992, Length=125, Percent_Identity=30.4, Blast_Score=62, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 35969; Mature: 35969

Theoretical pI: Translated: 8.20; Mature: 8.20

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEGRKEDESMKYVYRWEGVLIVLLLIEFILFSLINSDFLNISNLLFSTNDFLFIAIAAIP
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHH
MTFVIVTGGIDVSVGSIMGLTSILIGVLWMNGISILFAVIISLIISCLAGALNGFIIKMT
HHEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEE
DVEPLVVTLGTMFLYGGIALVISGGAGASGYEGISGLPDAFVQLASGSFIGIPNLLWLLI
CCCHHHHHHHHHHHHCCHHEEEECCCCCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHH
VLTVLCAVLFHRTIYGRHVKLTGANENAAKYTGIMTKKVVIIAYMLSGLGGGLGGTFLTA
HHHHHHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
YFGSARADMGSETILPIITAVVLGGTLITGGKGSIIGTVLASIFIGLMQYGLQMTGLTNE
HHCCHHCCCCCCHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHHHHCCEECCCCCC
QSNVVIGIILILSVIMRHFKLHQFTLGKRKNLHKGEMS
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure
MEGRKEDESMKYVYRWEGVLIVLLLIEFILFSLINSDFLNISNLLFSTNDFLFIAIAAIP
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHH
MTFVIVTGGIDVSVGSIMGLTSILIGVLWMNGISILFAVIISLIISCLAGALNGFIIKMT
HHEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEE
DVEPLVVTLGTMFLYGGIALVISGGAGASGYEGISGLPDAFVQLASGSFIGIPNLLWLLI
CCCHHHHHHHHHHHHCCHHEEEECCCCCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHH
VLTVLCAVLFHRTIYGRHVKLTGANENAAKYTGIMTKKVVIIAYMLSGLGGGLGGTFLTA
HHHHHHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
YFGSARADMGSETILPIITAVVLGGTLITGGKGSIIGTVLASIFIGLMQYGLQMTGLTNE
HHCCHHCCCCCCHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHHHHCCEECCCCCC
QSNVVIGIILILSVIMRHFKLHQFTLGKRKNLHKGEMS
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA