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The map label for this gene is ycsD [H]

Identifier: 49185707

GI number: 49185707

Start: 2682008

End: 2682406

Strand: Direct

Name: ycsD [H]

Synonym: BAS2701

Alternate gene names: 49185707

Gene position: 2682008-2682406 (Clockwise)

Preceding gene: 49185706

Following gene: 49185708

Centisome position: 51.29

GC content: 35.59

Gene sequence:

>399_bases
ATGCATATTAAAGACACGCTTCCCCATCGTTATCCATTTTTAATGATTGATAAAGTAAAAAACGTAAAACAAGGTGAATC
CGTTACAGGATATAAACTCATTACAAATAACGAATGGTTTATAAATGATAGTCAAAATCATATGCCTCATATGTTAATTG
TAGAGGCACTTGCTCAGCTTAGTGCATTTGTACATACAAGTGAATCTGACGGACTAGGCTTCCTTTCCTCGTTAGATGGG
GTTACGTTCCATGAAAAAGCATATCCCGGTGATAAACTTGATTTACATTATGAGTTAACTCGCAATCGCCGAGGTTTTGT
TCTCGGTAAAGGTACCGCAACTGTTAATAATCAACCGATTGTAACGATAGAAAAGCTATTAATATACCAAACAGAATAG

Upstream 100 bases:

>100_bases
GTATTTTCGCCCTTGAAAAAGTAGATGAATTAGTTAAAAATTAGTTCCCACTCCCCTGCTTAACTTTAGCAGGGGTATTA
TTCATTGGAGGTACTTTCAT

Downstream 100 bases:

>100_bases
AGACGTTTTCATTCACTAGGGTATCTATCTCCTACAAATTCGTCTCATCAACATGAACAGAGTAAACAAATTATTTAGTT
AGGGGCAGAAAAATGGAAAG

Product: (3R)-hydroxymyristoyl-(acyl-carrier-protein) dehydratase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 132; Mature: 132

Protein sequence:

>132_residues
MHIKDTLPHRYPFLMIDKVKNVKQGESVTGYKLITNNEWFINDSQNHMPHMLIVEALAQLSAFVHTSESDGLGFLSSLDG
VTFHEKAYPGDKLDLHYELTRNRRGFVLGKGTATVNNQPIVTIEKLLIYQTE

Sequences:

>Translated_132_residues
MHIKDTLPHRYPFLMIDKVKNVKQGESVTGYKLITNNEWFINDSQNHMPHMLIVEALAQLSAFVHTSESDGLGFLSSLDG
VTFHEKAYPGDKLDLHYELTRNRRGFVLGKGTATVNNQPIVTIEKLLIYQTE
>Mature_132_residues
MHIKDTLPHRYPFLMIDKVKNVKQGESVTGYKLITNNEWFINDSQNHMPHMLIVEALAQLSAFVHTSESDGLGFLSSLDG
VTFHEKAYPGDKLDLHYELTRNRRGFVLGKGTATVNNQPIVTIEKLLIYQTE

Specific function: Involved In Saturated Fatty Acids Biosynthesis. [C]

COG id: COG0764

COG function: function code I; 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the thioester dehydratase family. FabZ subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786377, Length=128, Percent_Identity=30.46875, Blast_Score=67, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013114 [H]

Pfam domain/function: PF07977 FabA [H]

EC number: 4.2.1.-

Molecular weight: Translated: 15028; Mature: 15028

Theoretical pI: Translated: 6.90; Mature: 6.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHIKDTLPHRYPFLMIDKVKNVKQGESVTGYKLITNNEWFINDSQNHMPHMLIVEALAQL
CCCCCCCCCCCCEEEEECCCCCCCCCCCCCEEEEECCEEEEECCCCCCCHHHHHHHHHHH
SAFVHTSESDGLGFLSSLDGVTFHEKAYPGDKLDLHYELTRNRRGFVLGKGTATVNNQPI
HHHEECCCCCCCEEHHHCCCCEEECCCCCCCCEEEEEEECCCCCCEEEECCCEEECCCCE
VTIEKLLIYQTE
EEEEEEEEEECC
>Mature Secondary Structure
MHIKDTLPHRYPFLMIDKVKNVKQGESVTGYKLITNNEWFINDSQNHMPHMLIVEALAQL
CCCCCCCCCCCCEEEEECCCCCCCCCCCCCEEEEECCEEEEECCCCCCCHHHHHHHHHHH
SAFVHTSESDGLGFLSSLDGVTFHEKAYPGDKLDLHYELTRNRRGFVLGKGTATVNNQPI
HHHEECCCCCCCEEHHHCCCCEEECCCCCCCCEEEEEEECCCCCCEEEECCCEEECCCCE
VTIEKLLIYQTE
EEEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Carbon-Oxygen Lyases; Hydro-Lyases [C]

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969502; 9384377; 10568751 [H]