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The map label for this gene is atoC [C]

Identifier: 49185652

GI number: 49185652

Start: 2632610

End: 2634271

Strand: Direct

Name: atoC [C]

Synonym: BAS2645

Alternate gene names: 49185652

Gene position: 2632610-2634271 (Clockwise)

Preceding gene: 49185640

Following gene: 49185653

Centisome position: 50.35

GC content: 36.82

Gene sequence:

>1662_bases
ATGGCATTCTCATTTCCCACAATAAAAGAATTTCTAAAAACATTATCTATTGATCATACATATAGCACTCAACACATTGA
ACAAGTTGACGAAAAATTTTATTACCGACCTTCTACTACAGAAGAATATAATTGTGCAGTTATATATGAAGATGATTCGT
TCACCACTTTAATTGACGGGGTTTCCAATGAACTAGCTGTTATCATAATGAACCGAAATAAAGAGCCTATATGCTCTATA
ACGGCACAGCAAATCATTCCGTTTCTTGTTAAGTCTTACAATGAACTCCAATCTTTTTATAACACCGTAATACAAACTAC
TGATTCTTCTGTTACAGTCATCGATGATAAAGAACGTGTCCGTACTTGGACAGATGGCGCCGAAAAGATTTTTTCAGTCA
AGCATAATGAAATTATCGGGCAACCTATCACTCGCTTTTTTGACTATAAAGATTTGGAAATTTTGCAATCATTACATGAC
GGAAAAAGCATAATCGCTCAGTTCCATCAACCTCGGCCTGATCTGTTCGTATTAATTAATTCAAACCCAGTTTATTGTAA
CGATGAAATTATAGGAGCAGTTGTCTCTGAAACTGATGTTACGAATCAAGTCGCTTTAAATGAAAAACTATTTAATATGT
CACATGAAATGCACCGTTTAGAACAAGAGGTCGCAAAGTATAAAGATGAATCAGACCCTTTCCTTGCGATGAATGGAAAG
AGCCCTGTTATACAAAGAACGATACAATTAGCTAGAAAAGTTTGTTCGGTGAAATCAACTGTTTTAATACTCGGCGAAAG
TGGTGTTGGAAAAGAAGTATTTGCGAAAGCAATTCATGATGCAAGTGAAGCAGCTAAAGCTCCGTTCATTTCAATTAACT
GCGGCGCAATTCCAGAAGCATTATTTGAAAGTGAATTATTCGGCTATGAGCGCGGGGCGTTTTCTGGTGCAAATAGCAAA
GGGAAAAAGGGTAAAATAGAGCTCGCGCAAGGCGGCACATTATTCCTTGATGAAATAGGCGAAATGCCGCTCGATATGCA
AGTAAAACTTTTACGTGTACTACAAGAAAGAAAATATTACCGAGTTGGCGGAGAAAAAGAGATTCATATTGATTTCCGTA
TTATCGCTGCTACAAATCGTGATTTACAAGAAGAAATGAAAAAAGGCACGTTCCGAGAAGATTTATACTATCGTCTAAAT
GTCGTTAGCTTGCATATTCCACCGCTGCGGGAAAGACGCGAAGATATCATTGAATTAACCTACTCTTTCTTAAACGATTT
TTCAATCAACTATAACAGACCAATTCGCGACTTACCGTCCAGCATTATGCATGAACTGCTTCATTACAATTGGCCAGGTA
ATATTCGCGAGCTCCGTAACGTTGTTGAAAGACTTGTTGTATTTGCGACTGACGGTATTATAAAACAAGAATATTTACCA
TTTCATACAACTGAAACTTTAGAGGAACATTCGGCTCATTCCCTATTACTCAGCAACAATAATACAATCCTCTCTTTACA
AGAAGAGATGGAGGAACATGAGAAAAAAGTCATTGAGAGGGCTTTACGCATTTTGAATGGGAATAAATTAGAATGTGCGA
AACAGCTTGGTGTTACGAGGGCCACTTTATATAACCGTTTAAAAAAACTTGGATTACAATAA

Upstream 100 bases:

>100_bases
AAACAATATTTTTATTTGTAAAAATATTTTAAATTTATCGTAAATAAGTGTATTATTTTTTTATCACTGTCAAAATTTTT
ATACATAACAGGAGGACAAT

Downstream 100 bases:

>100_bases
ACCTTCCCTCCTCTATATTGGCATATTTTTTGCATTATATAATTTGTGCAAACCGAACTAGAGGAGGAATACATATGACG
AATAAAGACCACTTAATTGT

Product: sensory box sigma-54 dependent DNA-binding response regulator

Products: NA

Alternate protein names: (S)-limonene 6-monooxygenase; (S)-limonene 7-monooxygenase; Carveol dehydrogenase; Perillyl-alcohol dehydrogenase [H]

Number of amino acids: Translated: 553; Mature: 552

Protein sequence:

>553_residues
MAFSFPTIKEFLKTLSIDHTYSTQHIEQVDEKFYYRPSTTEEYNCAVIYEDDSFTTLIDGVSNELAVIIMNRNKEPICSI
TAQQIIPFLVKSYNELQSFYNTVIQTTDSSVTVIDDKERVRTWTDGAEKIFSVKHNEIIGQPITRFFDYKDLEILQSLHD
GKSIIAQFHQPRPDLFVLINSNPVYCNDEIIGAVVSETDVTNQVALNEKLFNMSHEMHRLEQEVAKYKDESDPFLAMNGK
SPVIQRTIQLARKVCSVKSTVLILGESGVGKEVFAKAIHDASEAAKAPFISINCGAIPEALFESELFGYERGAFSGANSK
GKKGKIELAQGGTLFLDEIGEMPLDMQVKLLRVLQERKYYRVGGEKEIHIDFRIIAATNRDLQEEMKKGTFREDLYYRLN
VVSLHIPPLRERREDIIELTYSFLNDFSINYNRPIRDLPSSIMHELLHYNWPGNIRELRNVVERLVVFATDGIIKQEYLP
FHTTETLEEHSAHSLLLSNNNTILSLQEEMEEHEKKVIERALRILNGNKLECAKQLGVTRATLYNRLKKLGLQ

Sequences:

>Translated_553_residues
MAFSFPTIKEFLKTLSIDHTYSTQHIEQVDEKFYYRPSTTEEYNCAVIYEDDSFTTLIDGVSNELAVIIMNRNKEPICSI
TAQQIIPFLVKSYNELQSFYNTVIQTTDSSVTVIDDKERVRTWTDGAEKIFSVKHNEIIGQPITRFFDYKDLEILQSLHD
GKSIIAQFHQPRPDLFVLINSNPVYCNDEIIGAVVSETDVTNQVALNEKLFNMSHEMHRLEQEVAKYKDESDPFLAMNGK
SPVIQRTIQLARKVCSVKSTVLILGESGVGKEVFAKAIHDASEAAKAPFISINCGAIPEALFESELFGYERGAFSGANSK
GKKGKIELAQGGTLFLDEIGEMPLDMQVKLLRVLQERKYYRVGGEKEIHIDFRIIAATNRDLQEEMKKGTFREDLYYRLN
VVSLHIPPLRERREDIIELTYSFLNDFSINYNRPIRDLPSSIMHELLHYNWPGNIRELRNVVERLVVFATDGIIKQEYLP
FHTTETLEEHSAHSLLLSNNNTILSLQEEMEEHEKKVIERALRILNGNKLECAKQLGVTRATLYNRLKKLGLQ
>Mature_552_residues
AFSFPTIKEFLKTLSIDHTYSTQHIEQVDEKFYYRPSTTEEYNCAVIYEDDSFTTLIDGVSNELAVIIMNRNKEPICSIT
AQQIIPFLVKSYNELQSFYNTVIQTTDSSVTVIDDKERVRTWTDGAEKIFSVKHNEIIGQPITRFFDYKDLEILQSLHDG
KSIIAQFHQPRPDLFVLINSNPVYCNDEIIGAVVSETDVTNQVALNEKLFNMSHEMHRLEQEVAKYKDESDPFLAMNGKS
PVIQRTIQLARKVCSVKSTVLILGESGVGKEVFAKAIHDASEAAKAPFISINCGAIPEALFESELFGYERGAFSGANSKG
KKGKIELAQGGTLFLDEIGEMPLDMQVKLLRVLQERKYYRVGGEKEIHIDFRIIAATNRDLQEEMKKGTFREDLYYRLNV
VSLHIPPLRERREDIIELTYSFLNDFSINYNRPIRDLPSSIMHELLHYNWPGNIRELRNVVERLVVFATDGIIKQEYLPF
HTTETLEEHSAHSLLLSNNNTILSLQEEMEEHEKKVIERALRILNGNKLECAKQLGVTRATLYNRLKKLGLQ

Specific function: Involved in limonene hydroxylation to a mixture of carveol and perillyl alcohol as well as in dehydrogenation of these products to carvone and perillyl aldehyde. Aromatic alcohols containing an isopropyl or isopropenyl group at ring position 4 also served

COG id: COG3829

COG function: function code KT; Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 sigma-54 factor interaction domain [H]

Homologues:

Organism=Escherichia coli, GI1788550, Length=313, Percent_Identity=47.9233226837061, Blast_Score=280, Evalue=2e-76,
Organism=Escherichia coli, GI1790437, Length=314, Percent_Identity=46.1783439490446, Blast_Score=273, Evalue=3e-74,
Organism=Escherichia coli, GI1789233, Length=475, Percent_Identity=36.8421052631579, Blast_Score=264, Evalue=1e-71,
Organism=Escherichia coli, GI1790299, Length=421, Percent_Identity=38.479809976247, Blast_Score=263, Evalue=2e-71,
Organism=Escherichia coli, GI1788905, Length=314, Percent_Identity=44.2675159235669, Blast_Score=256, Evalue=2e-69,
Organism=Escherichia coli, GI87082117, Length=317, Percent_Identity=43.8485804416404, Blast_Score=256, Evalue=3e-69,
Organism=Escherichia coli, GI1786524, Length=330, Percent_Identity=42.7272727272727, Blast_Score=253, Evalue=2e-68,
Organism=Escherichia coli, GI1789087, Length=349, Percent_Identity=40.6876790830946, Blast_Score=246, Evalue=3e-66,
Organism=Escherichia coli, GI87082152, Length=335, Percent_Identity=40, Blast_Score=222, Evalue=6e-59,
Organism=Escherichia coli, GI1787583, Length=382, Percent_Identity=35.6020942408377, Blast_Score=218, Evalue=6e-58,
Organism=Escherichia coli, GI87081872, Length=342, Percent_Identity=38.8888888888889, Blast_Score=188, Evalue=7e-49,
Organism=Escherichia coli, GI87081858, Length=456, Percent_Identity=27.1929824561404, Blast_Score=164, Evalue=2e-41,
Organism=Escherichia coli, GI1789828, Length=246, Percent_Identity=35.3658536585366, Blast_Score=149, Evalue=6e-37,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR002197
- InterPro:   IPR000014
- InterPro:   IPR002078 [H]

Pfam domain/function: PF02954 HTH_8; PF00158 Sigma54_activat [H]

EC number: =1.14.13.48; =1.14.13.49; =1.1.1.243; =1.1.1.144 [H]

Molecular weight: Translated: 63386; Mature: 63255

Theoretical pI: Translated: 5.64; Mature: 5.64

Prosite motif: PS50112 PAS ; PS00675 SIGMA54_INTERACT_1 ; PS00676 SIGMA54_INTERACT_2 ; PS00688 SIGMA54_INTERACT_3 ; PS50045 SIGMA54_INTERACT_4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAFSFPTIKEFLKTLSIDHTYSTQHIEQVDEKFYYRPSTTEEYNCAVIYEDDSFTTLIDG
CCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHEEECCCCCCCCEEEEEEECCCCHHHHHC
VSNELAVIIMNRNKEPICSITAQQIIPFLVKSYNELQSFYNTVIQTTDSSVTVIDDKERV
CCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHH
RTWTDGAEKIFSVKHNEIIGQPITRFFDYKDLEILQSLHDGKSIIAQFHQPRPDLFVLIN
HHHHCHHHHHHHHHHHHHHCCHHHHHHCCCHHHHHHHHHCCHHHHHHHCCCCCCEEEEEC
SNPVYCNDEIIGAVVSETDVTNQVALNEKLFNMSHEMHRLEQEVAKYKDESDPFLAMNGK
CCCEEECHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCC
SPVIQRTIQLARKVCSVKSTVLILGESGVGKEVFAKAIHDASEAAKAPFISINCGAIPEA
CHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHH
LFESELFGYERGAFSGANSKGKKGKIELAQGGTLFLDEIGEMPLDMQVKLLRVLQERKYY
HHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCEEEHHHHCCCCCCHHHHHHHHHHHCCCE
RVGGEKEIHIDFRIIAATNRDLQEEMKKGTFREDLYYRLNVVSLHIPPLRERREDIIELT
ECCCCEEEEEEEEEEEECCCHHHHHHHCCCCHHHHEEEEEEEEEECCCHHHHHHHHHHHH
YSFLNDFSINYNRPIRDLPSSIMHELLHYNWPGNIRELRNVVERLVVFATDGIIKQEYLP
HHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCHHHCCCC
FHTTETLEEHSAHSLLLSNNNTILSLQEEMEEHEKKVIERALRILNGNKLECAKQLGVTR
CCCHHHHHHCCCCEEEEECCCEEEEHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCHH
ATLYNRLKKLGLQ
HHHHHHHHHHCCC
>Mature Secondary Structure 
AFSFPTIKEFLKTLSIDHTYSTQHIEQVDEKFYYRPSTTEEYNCAVIYEDDSFTTLIDG
CCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHEEECCCCCCCCEEEEEEECCCCHHHHHC
VSNELAVIIMNRNKEPICSITAQQIIPFLVKSYNELQSFYNTVIQTTDSSVTVIDDKERV
CCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHH
RTWTDGAEKIFSVKHNEIIGQPITRFFDYKDLEILQSLHDGKSIIAQFHQPRPDLFVLIN
HHHHCHHHHHHHHHHHHHHCCHHHHHHCCCHHHHHHHHHCCHHHHHHHCCCCCCEEEEEC
SNPVYCNDEIIGAVVSETDVTNQVALNEKLFNMSHEMHRLEQEVAKYKDESDPFLAMNGK
CCCEEECHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCC
SPVIQRTIQLARKVCSVKSTVLILGESGVGKEVFAKAIHDASEAAKAPFISINCGAIPEA
CHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHH
LFESELFGYERGAFSGANSKGKKGKIELAQGGTLFLDEIGEMPLDMQVKLLRVLQERKYY
HHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCEEEHHHHCCCCCCHHHHHHHHHHHCCCE
RVGGEKEIHIDFRIIAATNRDLQEEMKKGTFREDLYYRLNVVSLHIPPLRERREDIIELT
ECCCCEEEEEEEEEEEECCCHHHHHHHCCCCHHHHEEEEEEEEEECCCHHHHHHHHHHHH
YSFLNDFSINYNRPIRDLPSSIMHELLHYNWPGNIRELRNVVERLVVFATDGIIKQEYLP
HHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCHHHCCCC
FHTTETLEEHSAHSLLLSNNNTILSLQEEMEEHEKKVIERALRILNGNKLECAKQLGVTR
CCCHHHHHHCCCCEEEEECCCEEEEHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCHH
ATLYNRLKKLGLQ
HHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA