Click here to switch to the map view.

The map label for this gene is fliM [H]

Identifier: 49184600

GI number: 49184600

Start: 1609150

End: 1609752

Strand: Direct

Name: fliM [H]

Synonym: BAS1585

Alternate gene names: 49184600

Gene position: 1609150-1609752 (Clockwise)

Preceding gene: 49184599

Following gene: 49184601

Centisome position: 30.78

GC content: 39.47

Gene sequence:

>603_bases
ATGAGTGGCGAAAAATTAAGCCAAGAGCAAATTGATGCCCTGCTGAAGGCGGTTAATGAAGGCGAGGAAATGCCAGCTTT
CGCACAAGAAGCAGGAAAGCAAGAGAAATTTCAAGAGTATGATTTTAATAGACCGGAGAAGTTCGGTGTTGAGCATTTAC
GTAGCTTGCAAGCAATTGCTTCTACATTTGGTAAACAGACGTCACAGACGTTGTCAGCGCGTATGCGTATTCCAATTGAG
TTAGAACCTTCAACGGTTGAGCAAGTTCCATTTACGAGTGAGTATGTGGAGAAAATGCCGAAAGATTACTATTTATATTG
CGTTATTGATCTTGGCCTTCCGGAGCTTGGAGAAATTGTTATTGAGATTGATTTAGCTTTCGTTATTTATATTCATGAAT
GTTGGCTTGGTGGAGATAGTAAGCGTAACTTTACGATGCGCAGACCACTTACCGCATTTGAGTTTTTAACATTGGATAAT
ATTTTTATGCTCCTTTGTAAAAATTTAGAGCAATCATTTGAAAGCGTTGTTGCGATTGAACCGAAATTTGTAACGACAGA
GAGAGACAGATCCGAATGCATTAAAGATTACGACAGCAAGTGA

Upstream 100 bases:

>100_bases
TGCTTGAGAATGAAGAGATTGGAACCGGAAAGATTTTGACGAAAAACGGGAAGATGTACGTTGAAATCGTTGAATTGAAA
AGGTAGGGAAGGGGATTGTC

Downstream 100 bases:

>100_bases
TATTATTTCATTACTAAACGTAAATATGAAAACGGATTTTTGGAATACGACAGTGCGTATCGGAATTCCGTTCTTATCTG
TTGAAGAAATTATGGATAAG

Product: flagellar motor switch protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 200; Mature: 199

Protein sequence:

>200_residues
MSGEKLSQEQIDALLKAVNEGEEMPAFAQEAGKQEKFQEYDFNRPEKFGVEHLRSLQAIASTFGKQTSQTLSARMRIPIE
LEPSTVEQVPFTSEYVEKMPKDYYLYCVIDLGLPELGEIVIEIDLAFVIYIHECWLGGDSKRNFTMRRPLTAFEFLTLDN
IFMLLCKNLEQSFESVVAIEPKFVTTERDRSECIKDYDSK

Sequences:

>Translated_200_residues
MSGEKLSQEQIDALLKAVNEGEEMPAFAQEAGKQEKFQEYDFNRPEKFGVEHLRSLQAIASTFGKQTSQTLSARMRIPIE
LEPSTVEQVPFTSEYVEKMPKDYYLYCVIDLGLPELGEIVIEIDLAFVIYIHECWLGGDSKRNFTMRRPLTAFEFLTLDN
IFMLLCKNLEQSFESVVAIEPKFVTTERDRSECIKDYDSK
>Mature_199_residues
SGEKLSQEQIDALLKAVNEGEEMPAFAQEAGKQEKFQEYDFNRPEKFGVEHLRSLQAIASTFGKQTSQTLSARMRIPIEL
EPSTVEQVPFTSEYVEKMPKDYYLYCVIDLGLPELGEIVIEIDLAFVIYIHECWLGGDSKRNFTMRRPLTAFEFLTLDNI
FMLLCKNLEQSFESVVAIEPKFVTTERDRSECIKDYDSK

Specific function: FliM is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the mot

COG id: COG1868

COG function: function code N; Flagellar motor switch protein

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein (Potential). Bacterial flagellum basal body [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the FliM family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001689
- InterPro:   IPR001543 [H]

Pfam domain/function: PF02154 FliM; PF01052 SpoA [H]

EC number: NA

Molecular weight: Translated: 23061; Mature: 22929

Theoretical pI: Translated: 4.39; Mature: 4.39

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGEKLSQEQIDALLKAVNEGEEMPAFAQEAGKQEKFQEYDFNRPEKFGVEHLRSLQAIA
CCCCCCCHHHHHHHHHHHHCCCCCCHHHHHCCCHHHHHHCCCCCCHHHHHHHHHHHHHHH
STFGKQTSQTLSARMRIPIELEPSTVEQVPFTSEYVEKMPKDYYLYCVIDLGLPELGEIV
HHHCHHHHHHHHHHHCCCEEECCCCHHHCCCCHHHHHHCCCCEEEEEEEECCCCCHHHHH
IEIDLAFVIYIHECWLGGDSKRNFTMRRPLTAFEFLTLDNIFMLLCKNLEQSFESVVAIE
HHHHHHHHHHHHHHHCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEECC
PKFVTTERDRSECIKDYDSK
CCEECCCCHHHHHHHHCCCC
>Mature Secondary Structure 
SGEKLSQEQIDALLKAVNEGEEMPAFAQEAGKQEKFQEYDFNRPEKFGVEHLRSLQAIA
CCCCCCHHHHHHHHHHHHCCCCCCHHHHHCCCHHHHHHCCCCCCHHHHHHHHHHHHHHH
STFGKQTSQTLSARMRIPIELEPSTVEQVPFTSEYVEKMPKDYYLYCVIDLGLPELGEIV
HHHCHHHHHHHHHHHCCCEEECCCCHHHCCCCHHHHHHCCCCEEEEEEEECCCCCHHHHH
IEIDLAFVIYIHECWLGGDSKRNFTMRRPLTAFEFLTLDNIFMLLCKNLEQSFESVVAIE
HHHHHHHHHHHHHHHCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEECC
PKFVTTERDRSECIKDYDSK
CCEECCCCHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8755894; 9665876; 8529894 [H]