Click here to switch to the map view.

The map label for this gene is sinR [H]

Identifier: 49184213

GI number: 49184213

Start: 1239506

End: 1239829

Strand: Reverse

Name: sinR [H]

Synonym: BAS1195

Alternate gene names: 49184213

Gene position: 1239829-1239506 (Counterclockwise)

Preceding gene: 49184214

Following gene: 49184206

Centisome position: 23.71

GC content: 35.19

Gene sequence:

>324_bases
ATGATTGGAGAACGTATAAAACGCCTTCGTTTACAAAAAGGTATTTCATTAACTGAACTTGCCGAAAAAGCTGGCGTTGC
TAAATCTTACATTAGTTCTATAGAACGAAATTTACAAAAGAACCCTTCCATTCAGTTTCTTGAAAAGATCGCAGCAGTTC
TACAAATTCCAGTTGATACTTTACTTCATGATGAAACAACAAAGGAAGCTAACCTAGACTCCGAATGGACACAGCTCGTC
AAAGATGCAATGAACTCTGGTGTCTCCAAAGAACAATTTCGTGAATTTCTTGAATTTACAAAATGGAAGCAAAATCAAAA
ATAA

Upstream 100 bases:

>100_bases
CCATCCAGCCAGGCTCAATAGGTTTGTTCTTTTTAACGAAGTTTATGTTATAATAATGACATCATAAGACAACTACATAT
TGATAGAAAGGTGCGCAAAT

Downstream 100 bases:

>100_bases
TAATAGAAAGAAGTGCTTACAAACCGCACTTCTTTTTTCTTTATAAAAAAAAGCGGGGGATACCCGCTTTTTTTATTATT
TTTCTTCTCCAGCTTCTTGG

Product: transcriptional regulator SinR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 107; Mature: 107

Protein sequence:

>107_residues
MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTLLHDETTKEANLDSEWTQLV
KDAMNSGVSKEQFREFLEFTKWKQNQK

Sequences:

>Translated_107_residues
MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTLLHDETTKEANLDSEWTQLV
KDAMNSGVSKEQFREFLEFTKWKQNQK
>Mature_107_residues
MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTLLHDETTKEANLDSEWTQLV
KDAMNSGVSKEQFREFLEFTKWKQNQK

Specific function: Affects autolysin level and flagellation [H]

COG id: COG1396

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Sin domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001387
- InterPro:   IPR010982
- InterPro:   IPR012288
- InterPro:   IPR010981 [H]

Pfam domain/function: PF01381 HTH_3; PF08671 SinI [H]

EC number: NA

Molecular weight: Translated: 12319; Mature: 12319

Theoretical pI: Translated: 9.66; Mature: 9.66

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDT
CCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
LLHDETTKEANLDSEWTQLVKDAMNSGVSKEQFREFLEFTKWKQNQK
HHHCCHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDT
CCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
LLHDETTKEANLDSEWTQLVKDAMNSGVSKEQFREFLEFTKWKQNQK
HHHCCHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2121898 [H]