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The map label for this gene is 49184168

Identifier: 49184168

GI number: 49184168

Start: 1197063

End: 1197581

Strand: Reverse

Name: 49184168

Synonym: BAS1148

Alternate gene names: NA

Gene position: 1197581-1197063 (Counterclockwise)

Preceding gene: 49184170

Following gene: 49184167

Centisome position: 22.9

GC content: 36.42

Gene sequence:

>519_bases
ATGAAATTAGGCATTGTAATTTTTCCATCTAAAATGATTCAAGATAAAGCGAACGGATTGCGTAAACGTTATGATCCACA
CTACGCATTAGTTCCGCCACATATTACATTGAAAACACCCTTTGAGACGCAAGATGAACAATTAGAATCGATTGTAAACA
AGTTACATACAATCGCAAGTAAAACGAACCCTTTCACCCTTCATGTTGGAAAAGTTGGTTCATTCGCACCTGTTAATAAT
GTTATTTATTTTAAAGTAGAAAAAACACCTGAACTTACTTTCTTAAATGAGGAAATGCATAGCGGATTCTTTACACAAGA
ACGCGAATACGCTTTTGTACCTCATTTAACAATTGGGCAAGGCTTATCAGATGCAGAGCATGCTGATGTACTAGGTCGAT
TACGTATGAAAGATTTCTATTACGAACAACCAATTGACCGTTTCCACCTACTATATCAATTAGAAAATGGAACATGGACT
GTACACGAAACATTCCGCCTTGGAAAGGGGAACAACTAA

Upstream 100 bases:

>100_bases
TGAAATAATAGAGAGCAGTATTCAGAATAATTTGATATAATAGATTAAGAGAGTTATTTTCTCAAAATCTAACTAGACTT
ACAAAGGGAGGAATTGGAAC

Downstream 100 bases:

>100_bases
TTTGCATGCACAGATCGTACAAACGGACGAACAACTAAGAGATGCATTCTCTGTACGTAAGCAAGTATTTGTGAAGGAAC
AGCAAGTTTCTGCTGAAGAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 172; Mature: 172

Protein sequence:

>172_residues
MKLGIVIFPSKMIQDKANGLRKRYDPHYALVPPHITLKTPFETQDEQLESIVNKLHTIASKTNPFTLHVGKVGSFAPVNN
VIYFKVEKTPELTFLNEEMHSGFFTQEREYAFVPHLTIGQGLSDAEHADVLGRLRMKDFYYEQPIDRFHLLYQLENGTWT
VHETFRLGKGNN

Sequences:

>Translated_172_residues
MKLGIVIFPSKMIQDKANGLRKRYDPHYALVPPHITLKTPFETQDEQLESIVNKLHTIASKTNPFTLHVGKVGSFAPVNN
VIYFKVEKTPELTFLNEEMHSGFFTQEREYAFVPHLTIGQGLSDAEHADVLGRLRMKDFYYEQPIDRFHLLYQLENGTWT
VHETFRLGKGNN
>Mature_172_residues
MKLGIVIFPSKMIQDKANGLRKRYDPHYALVPPHITLKTPFETQDEQLESIVNKLHTIASKTNPFTLHVGKVGSFAPVNN
VIYFKVEKTPELTFLNEEMHSGFFTQEREYAFVPHLTIGQGLSDAEHADVLGRLRMKDFYYEQPIDRFHLLYQLENGTWT
VHETFRLGKGNN

Specific function: Unknown

COG id: COG1514

COG function: function code J; 2'-5' RNA ligase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0477 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014051
- InterPro:   IPR009097
- InterPro:   IPR022932 [H]

Pfam domain/function: PF02834 2_5_RNA_ligase [H]

EC number: NA

Molecular weight: Translated: 19877; Mature: 19877

Theoretical pI: Translated: 7.37; Mature: 7.37

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLGIVIFPSKMIQDKANGLRKRYDPHYALVPPHITLKTPFETQDEQLESIVNKLHTIAS
CCEEEEECCHHHHHHHHHHHHHHCCCCEEEECCEEEEECCCCCCHHHHHHHHHHHHHHHC
KTNPFTLHVGKVGSFAPVNNVIYFKVEKTPELTFLNEEMHSGFFTQEREYAFVPHLTIGQ
CCCCEEEEECCCCCCCCCCCEEEEEEECCCCEEEECHHHHCCCCCCCCCEEECCCEECCC
GLSDAEHADVLGRLRMKDFYYEQPIDRFHLLYQLENGTWTVHETFRLGKGNN
CCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCEEEEEEEEECCCCCC
>Mature Secondary Structure
MKLGIVIFPSKMIQDKANGLRKRYDPHYALVPPHITLKTPFETQDEQLESIVNKLHTIAS
CCEEEEECCHHHHHHHHHHHHHHCCCCEEEECCEEEEECCCCCCHHHHHHHHHHHHHHHC
KTNPFTLHVGKVGSFAPVNNVIYFKVEKTPELTFLNEEMHSGFFTQEREYAFVPHLTIGQ
CCCCEEEEECCCCCCCCCCCEEEEEEECCCCEEEECHHHHCCCCCCCCCEEECCCEECCC
GLSDAEHADVLGRLRMKDFYYEQPIDRFHLLYQLENGTWTVHETFRLGKGNN
CCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCEEEEEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA