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The map label for this gene is ydeE [H]

Identifier: 49184056

GI number: 49184056

Start: 1090808

End: 1091710

Strand: Direct

Name: ydeE [H]

Synonym: BAS1036

Alternate gene names: 49184056

Gene position: 1090808-1091710 (Clockwise)

Preceding gene: 49184053

Following gene: 49184057

Centisome position: 20.86

GC content: 38.21

Gene sequence:

>903_bases
ATGGAAAGTTATGAAACACAAATTCAAAGGTCCATTGATTATATCGAGGAAGATGTAATGGAAAAACAGACGCTGCGTAA
TTTAGCTCGCATTGCAGGTTTTTCTGAGTCGCATTTTCATCGTGTATTCCAGGCGTTAGTAGGTGATACGGTAATGGAGT
ATGTCCGAAAGAGGAGGTTAGCCCGGGCAGCTTATCAACTTTCTCATACGGATGAAAAAATTATTGATATCGCATTTGAG
CATGGCTTTCAATCTCACGAAACGTTCACGAGAGCCTTTAAAAAATTATTTCAAATGACACCGAGTGAATATCGAAAGCA
GGAAATAGAAACACCGATGTATTACAGCGTGAATGTAAAGCAAAGAAAATTAAATCCGTATTTAGGAGGCATACAAATGG
AATATCGTATTGTAAATAAACCAGAATTTTTAATGGCGGGTTATGAACTGAAGACGACAAGTAAAGAAGGGAAGAATCAT
CAAGACATTCCAGCATTTTGGCAAGAATATTTACAAAAAGATCTTGGAACAACGATTCCGAATCGTAAAGATACGAGCCA
ATGGGTAGAGCTTGGATTATGTACTGATTTTAATTTAGAAACAGGGGACTTCACTTATATTATTGGAATGGAAGTTACAG
ACTTTGAAAATGTACCAAATGAAATTGCAAAGCGTACGTTCCCAGCAGCAACATATGCAGTATTTACAACGCCGAAAGTT
CCTCATGAAGAAATGGTATCGTCTATTCACCAAACATGGAATGCAGTATTCTCAGAGTGGTTCCCGCATTCAGGATACGA
ACATTGCGGCGTTAATGAGTTTGAGCTATACGATGAGCGTTCCCATGCAGATAAAAGTGAGTTCGCTCAAATTGAACTTT
GGATACCGGTGAAGAAGAAATAA

Upstream 100 bases:

>100_bases
TATAAAAAAGTTACAATTTTTTATGGAATTATAGTAAAAAACGTCAAGAATTGGATAAGATTCTCTTTTATCATAATACA
TATAAGGCGGGTGAACAGAG

Downstream 100 bases:

>100_bases
TAGATTGAGAGCGAGTCATTGAGAAATGGTTCGCTTTTTTATAAAGGGAGAGTGGGGATATGTTCCAAAAACTAGAATGT
GTATCTATACATACGAAGGA

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 300; Mature: 300

Protein sequence:

>300_residues
MESYETQIQRSIDYIEEDVMEKQTLRNLARIAGFSESHFHRVFQALVGDTVMEYVRKRRLARAAYQLSHTDEKIIDIAFE
HGFQSHETFTRAFKKLFQMTPSEYRKQEIETPMYYSVNVKQRKLNPYLGGIQMEYRIVNKPEFLMAGYELKTTSKEGKNH
QDIPAFWQEYLQKDLGTTIPNRKDTSQWVELGLCTDFNLETGDFTYIIGMEVTDFENVPNEIAKRTFPAATYAVFTTPKV
PHEEMVSSIHQTWNAVFSEWFPHSGYEHCGVNEFELYDERSHADKSEFAQIELWIPVKKK

Sequences:

>Translated_300_residues
MESYETQIQRSIDYIEEDVMEKQTLRNLARIAGFSESHFHRVFQALVGDTVMEYVRKRRLARAAYQLSHTDEKIIDIAFE
HGFQSHETFTRAFKKLFQMTPSEYRKQEIETPMYYSVNVKQRKLNPYLGGIQMEYRIVNKPEFLMAGYELKTTSKEGKNH
QDIPAFWQEYLQKDLGTTIPNRKDTSQWVELGLCTDFNLETGDFTYIIGMEVTDFENVPNEIAKRTFPAATYAVFTTPKV
PHEEMVSSIHQTWNAVFSEWFPHSGYEHCGVNEFELYDERSHADKSEFAQIELWIPVKKK
>Mature_300_residues
MESYETQIQRSIDYIEEDVMEKQTLRNLARIAGFSESHFHRVFQALVGDTVMEYVRKRRLARAAYQLSHTDEKIIDIAFE
HGFQSHETFTRAFKKLFQMTPSEYRKQEIETPMYYSVNVKQRKLNPYLGGIQMEYRIVNKPEFLMAGYELKTTSKEGKNH
QDIPAFWQEYLQKDLGTTIPNRKDTSQWVELGLCTDFNLETGDFTYIIGMEVTDFENVPNEIAKRTFPAATYAVFTTPKV
PHEEMVSSIHQTWNAVFSEWFPHSGYEHCGVNEFELYDERSHADKSEFAQIELWIPVKKK

Specific function: Binds To The Right Arm Of The Replication Origin Oric Of The E.Coli Chromosome. Rob Binding May Influence The Formation Of The Nucleoprotein Structure, Required For Oric Function In The Initiation Of Replication. [C]

COG id: COG3708

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790857, Length=99, Percent_Identity=39.3939393939394, Blast_Score=81, Evalue=9e-17,
Organism=Escherichia coli, GI1790497, Length=103, Percent_Identity=35.9223300970874, Blast_Score=75, Evalue=6e-15,
Organism=Escherichia coli, GI87081928, Length=98, Percent_Identity=31.6326530612245, Blast_Score=70, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010499
- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060
- InterPro:   IPR011256 [H]

Pfam domain/function: PF06445 AraC_E_bind; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 35307; Mature: 35307

Theoretical pI: Translated: 5.79; Mature: 5.79

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MESYETQIQRSIDYIEEDVMEKQTLRNLARIAGFSESHFHRVFQALVGDTVMEYVRKRRL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
ARAAYQLSHTDEKIIDIAFEHGFQSHETFTRAFKKLFQMTPSEYRKQEIETPMYYSVNVK
HHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHCCCCCEEEECCH
QRKLNPYLGGIQMEYRIVNKPEFLMAGYELKTTSKEGKNHQDIPAFWQEYLQKDLGTTIP
HHHCCCCCCCEEEEEEECCCCCEEEECCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCC
NRKDTSQWVELGLCTDFNLETGDFTYIIGMEVTDFENVPNEIAKRTFPAATYAVFTTPKV
CCCCHHHHHHHHCCCCCCCCCCCEEEEEEEEECCHHCCHHHHHHHCCCCHHEEEEECCCC
PHEEMVSSIHQTWNAVFSEWFPHSGYEHCGVNEFELYDERSHADKSEFAQIELWIPVKKK
CHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCCCCCCCCHHCEEEEEEEECCCC
>Mature Secondary Structure
MESYETQIQRSIDYIEEDVMEKQTLRNLARIAGFSESHFHRVFQALVGDTVMEYVRKRRL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
ARAAYQLSHTDEKIIDIAFEHGFQSHETFTRAFKKLFQMTPSEYRKQEIETPMYYSVNVK
HHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHCCCCCEEEECCH
QRKLNPYLGGIQMEYRIVNKPEFLMAGYELKTTSKEGKNHQDIPAFWQEYLQKDLGTTIP
HHHCCCCCCCEEEEEEECCCCCEEEECCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCC
NRKDTSQWVELGLCTDFNLETGDFTYIIGMEVTDFENVPNEIAKRTFPAATYAVFTTPKV
CCCCHHHHHHHHCCCCCCCCCCCEEEEEEEEECCHHCCHHHHHHHCCCCHHEEEEECCCC
PHEEMVSSIHQTWNAVFSEWFPHSGYEHCGVNEFELYDERSHADKSEFAQIELWIPVKKK
CHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCCCCCCCCHHCEEEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]