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The map label for this gene is appB [H]

Identifier: 49183883

GI number: 49183883

Start: 923599

End: 924549

Strand: Direct

Name: appB [H]

Synonym: BAS0859

Alternate gene names: 49183883

Gene position: 923599-924549 (Clockwise)

Preceding gene: 49183882

Following gene: 49183884

Centisome position: 17.66

GC content: 36.28

Gene sequence:

>951_bases
GTGTATAAAGTAATTGCGAAGAGGCTTTTAAATGCAATTCCGCTTTTATTTGTTATTTCTATTATTTCTTTTCTATTAAT
AAAACTAGCACCAGGAGATCCTGTGCGAAACTTTGTCACGCCGAATATGAGTCCAATTGATGTTGAGCGTATTCGCAAAA
GTTTAGGACTAGACCAACCAATTTATATGCAGTATATTTTATGGCTGAAAAATATTTTAACAGGGAACTTTGGTTACTCA
CTGCAAAATCATCGTCCTGTTTTAGATCTTATTGTAGAAAGATTACCAGCGACAATCGGTTTAATGGGATCTTCTTTACT
CGTCTCATTTGTGATCGCAATCCCACTTGGGTTATTTACAGGTGTGAAAAAGAATTCTATCTTTGATCGCATTGTAAACT
TTATTTCCTATGTAGGAATCTCAATGCTAGTCTTTTGGTTCGCGTTACTATTAATCTACTTGTTCTCTTTAAAGCTGAAT
CTTCTTCCGAGTATGGGTATGCGTACGGTTGGCCAAGATTCCGTCTGGGATATTGTCCAACATGGTATTTTACCTTGCAT
GGTGCTTGCGTTCCAAAACATCTCTGTCTATATGAGATATATTCGCTCAAGTACGATTCAGCAATTAGAAGAAGACTACG
TACAAATTCAATATGCGTACGGTGCTTCAAAGAAAACAGTTTTATTTAATCACGTGCTTCGAAATGTATTAATACCGATC
ATTACAATTTTCGGATTATCTATTCCAAGTTTAGTGGGCGGAGCGTTTATTACGGAAACAGTATTTTCATGGCCGGGTCT
TGGTTCACTTGGGGTAAATGCTATTTTTAGATTTGATTATCCGATTATCATGGCAATTACATTATTATCATCATTCATGT
TAATTCTCGGTAACTTAATTGCTGATATTTTATATGGCGTAGTAGATCCGCGCATTCGAATGAGGGGGTGA

Upstream 100 bases:

>100_bases
CAATGTTTGAAGATGTATCTAAGATTTATGAAGTGAAATAAGAAACAAACAGTAAAGAAGCTGGTGGAAATCAGCTTCTT
TAGCTTGAGGGGGGAAGTTT

Downstream 100 bases:

>100_bases
TTTGGAATGAATAATAGGAGATTTCAAACGATAAAGCATAGTTTTACAAAAAATAAGTTTGTTGCAATGGGAGTTATTAT
ACTTGCCGTTTTAACGGTCG

Product: oligopeptide ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 316; Mature: 316

Protein sequence:

>316_residues
MYKVIAKRLLNAIPLLFVISIISFLLIKLAPGDPVRNFVTPNMSPIDVERIRKSLGLDQPIYMQYILWLKNILTGNFGYS
LQNHRPVLDLIVERLPATIGLMGSSLLVSFVIAIPLGLFTGVKKNSIFDRIVNFISYVGISMLVFWFALLLIYLFSLKLN
LLPSMGMRTVGQDSVWDIVQHGILPCMVLAFQNISVYMRYIRSSTIQQLEEDYVQIQYAYGASKKTVLFNHVLRNVLIPI
ITIFGLSIPSLVGGAFITETVFSWPGLGSLGVNAIFRFDYPIIMAITLLSSFMLILGNLIADILYGVVDPRIRMRG

Sequences:

>Translated_316_residues
MYKVIAKRLLNAIPLLFVISIISFLLIKLAPGDPVRNFVTPNMSPIDVERIRKSLGLDQPIYMQYILWLKNILTGNFGYS
LQNHRPVLDLIVERLPATIGLMGSSLLVSFVIAIPLGLFTGVKKNSIFDRIVNFISYVGISMLVFWFALLLIYLFSLKLN
LLPSMGMRTVGQDSVWDIVQHGILPCMVLAFQNISVYMRYIRSSTIQQLEEDYVQIQYAYGASKKTVLFNHVLRNVLIPI
ITIFGLSIPSLVGGAFITETVFSWPGLGSLGVNAIFRFDYPIIMAITLLSSFMLILGNLIADILYGVVDPRIRMRG
>Mature_316_residues
MYKVIAKRLLNAIPLLFVISIISFLLIKLAPGDPVRNFVTPNMSPIDVERIRKSLGLDQPIYMQYILWLKNILTGNFGYS
LQNHRPVLDLIVERLPATIGLMGSSLLVSFVIAIPLGLFTGVKKNSIFDRIVNFISYVGISMLVFWFALLLIYLFSLKLN
LLPSMGMRTVGQDSVWDIVQHGILPCMVLAFQNISVYMRYIRSSTIQQLEEDYVQIQYAYGASKKTVLFNHVLRNVLIPI
ITIFGLSIPSLVGGAFITETVFSWPGLGSLGVNAIFRFDYPIIMAITLLSSFMLILGNLIADILYGVVDPRIRMRG

Specific function: This protein is a component of an oligopeptide permease, a binding protein-dependent transport system. This APP system can completely substitute for the OPP system in both sporulation and genetic competence, though, unlike OPP, is incapable of transportin

COG id: COG0601

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787053, Length=315, Percent_Identity=39.3650793650794, Blast_Score=224, Evalue=8e-60,
Organism=Escherichia coli, GI1789888, Length=316, Percent_Identity=37.3417721518987, Blast_Score=216, Evalue=1e-57,
Organism=Escherichia coli, GI1789965, Length=338, Percent_Identity=35.207100591716, Blast_Score=214, Evalue=7e-57,
Organism=Escherichia coli, GI1787761, Length=335, Percent_Identity=34.3283582089552, Blast_Score=183, Evalue=1e-47,
Organism=Escherichia coli, GI1787497, Length=316, Percent_Identity=30.0632911392405, Blast_Score=159, Evalue=2e-40,
Organism=Escherichia coli, GI1787550, Length=272, Percent_Identity=31.9852941176471, Blast_Score=142, Evalue=2e-35,
Organism=Escherichia coli, GI1788504, Length=357, Percent_Identity=28.2913165266106, Blast_Score=130, Evalue=1e-31,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 35528; Mature: 35528

Theoretical pI: Translated: 9.99; Mature: 9.99

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYKVIAKRLLNAIPLLFVISIISFLLIKLAPGDPVRNFVTPNMSPIDVERIRKSLGLDQP
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCCCHHHHHHHCCCCCH
IYMQYILWLKNILTGNFGYSLQNHRPVLDLIVERLPATIGLMGSSLLVSFVIAIPLGLFT
HHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GVKKNSIFDRIVNFISYVGISMLVFWFALLLIYLFSLKLNLLPSMGMRTVGQDSVWDIVQ
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH
HGILPCMVLAFQNISVYMRYIRSSTIQQLEEDYVQIQYAYGASKKTVLFNHVLRNVLIPI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEHHHCCCCCHHHHHHHHHHHHHHHH
ITIFGLSIPSLVGGAFITETVFSWPGLGSLGVNAIFRFDYPIIMAITLLSSFMLILGNLI
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
ADILYGVVDPRIRMRG
HHHHHHHHCCCHHCCC
>Mature Secondary Structure
MYKVIAKRLLNAIPLLFVISIISFLLIKLAPGDPVRNFVTPNMSPIDVERIRKSLGLDQP
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCCCHHHHHHHCCCCCH
IYMQYILWLKNILTGNFGYSLQNHRPVLDLIVERLPATIGLMGSSLLVSFVIAIPLGLFT
HHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GVKKNSIFDRIVNFISYVGISMLVFWFALLLIYLFSLKLNLLPSMGMRTVGQDSVWDIVQ
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH
HGILPCMVLAFQNISVYMRYIRSSTIQQLEEDYVQIQYAYGASKKTVLFNHVLRNVLIPI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEHHHCCCCCHHHHHHHHHHHHHHHH
ITIFGLSIPSLVGGAFITETVFSWPGLGSLGVNAIFRFDYPIIMAITLLSSFMLILGNLI
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
ADILYGVVDPRIRMRG
HHHHHHHHCCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7997159; 9384377 [H]