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The map label for this gene is ocd2 [H]

Identifier: 49183878

GI number: 49183878

Start: 916921

End: 917898

Strand: Direct

Name: ocd2 [H]

Synonym: BAS0854

Alternate gene names: 49183878

Gene position: 916921-917898 (Clockwise)

Preceding gene: 49183877

Following gene: 49183879

Centisome position: 17.54

GC content: 42.23

Gene sequence:

>978_bases
ATGCTAGTTATAAGCGCGAAAGAACAAAGAGACTTAGTAAATATGAACGAAGTCATTGCATACGCGGCGCTTGCTTTACA
AGAGTTTTCCGCAGAAAGAACGATCACACCAATACGTACTTCACTGCCATTTGCGAATGAGAAAAATACTGCATTAATTA
TGCCTTCCGTAGCGGAGGGACTTGAAGTACTTGGCTTAAAAGTAGTAACAGTAGTCCCGCATAACAAAAAGATAGGAAAG
AAAACGATAAACGGGATTGTGATGCTATCCGACTTTCAAACGGGAGAACCGCTCGCACTTTTAGAAGGATCGTACTTAAC
GATGATTCGAACAGGCGCCTTATCGGGAGTAGCAACAAAATATTTAGCTCGTCATAACGCAAAAACTTTATGTATTATCG
GGACAGGAGAACAAGCGAAAGGGATTGCCGAAGCAGTATTTGCGGTTAGAGATATTGAAAGAGTCATGTTATACAACCGA
ACAGAAGAAAAAGCATATGCATTCTCGCAATATATACAAAAGAGATTCAATACACCTACTTATGTTCACAAAAACGCAAA
TGAAGCAATAAGCGAAGCAGACATCATCGTTACAACTACGAACGCATCCACACCAGTCTTCTCAGAAAAACTACAAAAGG
GCGTCCACATAAACGCCGTCGGCTCATTTAGGCCGAACATGCAAGAATTACCATCTCACGCCATCGCTAATGCAAATAAA
GTAGTAGTCGAATCAAAAGAGGCAGCACTAGAAGAAACAGGTGACCTTCAAGTTCCAGTGCGAGAAGGTCTATTTGAGGC
AAGCGACATCCATGCCGAACTTGGACAAATTATAAGCGGGGAAAAAGCAGGCCGCGAAAGTGATGAAGAGATTACTGTTT
TTAAATCGGTTGGTTTGGCAGTAGTGGATATTATCGTTGCGAAGTATTTGTATGAGAAAGCGGTGGAGCGCGGGGGTGGG
AGTAGGATTGAGTTTTGA

Upstream 100 bases:

>100_bases
GGGAATGCATTTATTACAGGTTTTCATCAGTTCGTTGTAGACCCGAGAGATGATTTGAATCGGGGATTTTTGTTAGGATA
AGAGGAGGTGGTGGAAAGAT

Downstream 100 bases:

>100_bases
GGGAGACTGCCTTTTGGTGGTCTTTTTTTGCATAAAATCTTGTAAAGCAAGAAAAAGTAGAGCATCTATATGAATTCAAT
TACATATCCAGTAATAACTA

Product: ornithine cyclodeaminase

Products: NA

Alternate protein names: OCD 2 [H]

Number of amino acids: Translated: 325; Mature: 325

Protein sequence:

>325_residues
MLVISAKEQRDLVNMNEVIAYAALALQEFSAERTITPIRTSLPFANEKNTALIMPSVAEGLEVLGLKVVTVVPHNKKIGK
KTINGIVMLSDFQTGEPLALLEGSYLTMIRTGALSGVATKYLARHNAKTLCIIGTGEQAKGIAEAVFAVRDIERVMLYNR
TEEKAYAFSQYIQKRFNTPTYVHKNANEAISEADIIVTTTNASTPVFSEKLQKGVHINAVGSFRPNMQELPSHAIANANK
VVVESKEAALEETGDLQVPVREGLFEASDIHAELGQIISGEKAGRESDEEITVFKSVGLAVVDIIVAKYLYEKAVERGGG
SRIEF

Sequences:

>Translated_325_residues
MLVISAKEQRDLVNMNEVIAYAALALQEFSAERTITPIRTSLPFANEKNTALIMPSVAEGLEVLGLKVVTVVPHNKKIGK
KTINGIVMLSDFQTGEPLALLEGSYLTMIRTGALSGVATKYLARHNAKTLCIIGTGEQAKGIAEAVFAVRDIERVMLYNR
TEEKAYAFSQYIQKRFNTPTYVHKNANEAISEADIIVTTTNASTPVFSEKLQKGVHINAVGSFRPNMQELPSHAIANANK
VVVESKEAALEETGDLQVPVREGLFEASDIHAELGQIISGEKAGRESDEEITVFKSVGLAVVDIIVAKYLYEKAVERGGG
SRIEF
>Mature_325_residues
MLVISAKEQRDLVNMNEVIAYAALALQEFSAERTITPIRTSLPFANEKNTALIMPSVAEGLEVLGLKVVTVVPHNKKIGK
KTINGIVMLSDFQTGEPLALLEGSYLTMIRTGALSGVATKYLARHNAKTLCIIGTGEQAKGIAEAVFAVRDIERVMLYNR
TEEKAYAFSQYIQKRFNTPTYVHKNANEAISEADIIVTTTNASTPVFSEKLQKGVHINAVGSFRPNMQELPSHAIANANK
VVVESKEAALEETGDLQVPVREGLFEASDIHAELGQIISGEKAGRESDEEITVFKSVGLAVVDIIVAKYLYEKAVERGGG
SRIEF

Specific function: Unknown

COG id: COG2423

COG function: function code E; Predicted ornithine cyclodeaminase, mu-crystallin homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ornithine cyclodeaminase family [H]

Homologues:

Organism=Homo sapiens, GI62241008, Length=288, Percent_Identity=34.375, Blast_Score=151, Evalue=8e-37,
Organism=Homo sapiens, GI4503065, Length=288, Percent_Identity=34.375, Blast_Score=151, Evalue=9e-37,
Organism=Drosophila melanogaster, GI24642678, Length=306, Percent_Identity=31.3725490196078, Blast_Score=97, Evalue=2e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016040
- InterPro:   IPR003462 [H]

Pfam domain/function: PF02423 OCD_Mu_crystall [H]

EC number: =4.3.1.12 [H]

Molecular weight: Translated: 35409; Mature: 35409

Theoretical pI: Translated: 6.00; Mature: 6.00

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLVISAKEQRDLVNMNEVIAYAALALQEFSAERTITPIRTSLPFANEKNTALIMPSVAEG
CEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCCCEEECCCHHHH
LEVLGLKVVTVVPHNKKIGKKTINGIVMLSDFQTGEPLALLEGSYLTMIRTGALSGVATK
HHHHCEEEEEEECCCCHHCHHHHCCEEEEECCCCCCCEEEECCCEEEEEECCCHHHHHHH
YLARHNAKTLCIIGTGEQAKGIAEAVFAVRDIERVMLYNRTEEKAYAFSQYIQKRFNTPT
HHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCC
YVHKNANEAISEADIIVTTTNASTPVFSEKLQKGVHINAVGSFRPNMQELPSHAIANANK
EEECCHHHHHCCCCEEEEECCCCCCHHHHHHHCCEEEEEECCCCCCHHHCCHHHHCCCCE
VVVESKEAALEETGDLQVPVREGLFEASDIHAELGQIISGEKAGRESDEEITVFKSVGLA
EEEECHHHHHHHCCCEEECHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCEEHHHHHHHH
VVDIIVAKYLYEKAVERGGGSRIEF
HHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MLVISAKEQRDLVNMNEVIAYAALALQEFSAERTITPIRTSLPFANEKNTALIMPSVAEG
CEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCCCEEECCCHHHH
LEVLGLKVVTVVPHNKKIGKKTINGIVMLSDFQTGEPLALLEGSYLTMIRTGALSGVATK
HHHHCEEEEEEECCCCHHCHHHHCCEEEEECCCCCCCEEEECCCEEEEEECCCHHHHHHH
YLARHNAKTLCIIGTGEQAKGIAEAVFAVRDIERVMLYNRTEEKAYAFSQYIQKRFNTPT
HHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCC
YVHKNANEAISEADIIVTTTNASTPVFSEKLQKGVHINAVGSFRPNMQELPSHAIANANK
EEECCHHHHHCCCCEEEEECCCCCCHHHHHHHCCEEEEEECCCCCCHHHCCHHHHCCCCE
VVVESKEAALEETGDLQVPVREGLFEASDIHAELGQIISGEKAGRESDEEITVFKSVGLA
EEEECHHHHHHHCCCEEECHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCEEHHHHHHHH
VVDIIVAKYLYEKAVERGGGSRIEF
HHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11481432 [H]