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The map label for this gene is yndF [H]

Identifier: 49183702

GI number: 49183702

Start: 729903

End: 731078

Strand: Direct

Name: yndF [H]

Synonym: BAS0677

Alternate gene names: 49183702

Gene position: 729903-731078 (Clockwise)

Preceding gene: 49183701

Following gene: 49183706

Centisome position: 13.96

GC content: 34.27

Gene sequence:

>1176_bases
ATGGTAGAAATGAAACACCTTCTTAAAATTATAATGGTTATAGTTTTAGCTGGATCTATAAGTGGGTGCTCTGAACTAGA
AGAAATAGAAGAAAGAGGATTTGTAGTAGGCGCAGCTTACGATATTGTGAAGAAAAAGAAATCAAATCCGATTATGAAAG
GGACGTATCAGATGGTACTTCCCAGTAAGTTAGCACAACAAGGTGGACAGGGCGATGGAGATAGTGAAAATTATATTAAT
GTAAGTGCGAAAGCAGATAGCGTCTTTGAGCAAATAAGAATAATTGCTAAAAAAATTAGTCGAACATTATTTTTTCCGCA
TATACAAGTCATTATTTTTTCGGATAAATTACTAGCGAATCCGTATGTTTTGCAAAATACGTTAGATGTATATTTTCGTG
ATCATGAAATGAGACGAAATATTCGTTTGTTCGTTTCCAAGAAAAATGCAGAATCTATTTTAAAACAGAGTGCAAAACCT
GAAAACTTACCGGCGCAGTACATTGATATGTTAGCTGAACATCCTCCGAAAAACGCTCAAATGATTGAGGCGGCGAGAAT
TGGTGAAGTACAAGGGAAAATGATCGCAGATCGAAGTTTTGCATTACCTCTCTTAGGATTAACTAAACAAGGCGTACAAA
TGGAAGGAGCGGCATTGATCCGTGGAAAGGATAATAAGTGCGTTGGAACTTTGAGTGGAGAACAAACATTAGGAATGAAC
TATGTAATAGGTAAAAAAATTGGAGGTTTCTTTACTGTTCGTAAAAAGAATCAGCTCATTACATATGAAATTCATAAGTT
GCGCCGAAAGATCCAAGTGTCTACTGAAAATGCTACAAAACCGAAGTTTGATATTCATTTGTCCACAGAAGGCATATTAG
CTGAATTACATTTTAATGAACCGAAACAAGTGATGAATGAAAAATTTTTAAAGAAAGAGATTTCAAAGGAAATGAAGAAG
CGTATTGAAAAGTCTATACAGCTTGTTCAAAAAAAATATAAGGTAGATGTATTGGAATTAGGAGAGGTATATAAGAGGCA
TAATTATAAAGAGTGGAAGAAAATTAGTAAGAATTGGGATCAAGGCCAGAATTATTTTAGTAATGCTGAAATTAATGTTC
ACGTTGATCCAACAATTGAACATTCAGGTTCAGCATTACCAAAGAAAGTGAAGTAA

Upstream 100 bases:

>100_bases
ACGTTATCAAGTTACGGAACGTATTTAGCGTGGATAGATATGGGGTTTGTCGTATTAGCTCCTTTGCTAGTTTTTATTGT
ATATAAAATAAAAAGAAGGA

Downstream 100 bases:

>100_bases
GGTGATGGAAGTTGTTTACTGGATTGGGAATTAGTTGCACAATATTAATAGCGATTCTTCCAGGAGCCATATACTTTATT
CATAAGAAACTCACAACGTA

Product: spore germination protein GerLC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 391; Mature: 391

Protein sequence:

>391_residues
MVEMKHLLKIIMVIVLAGSISGCSELEEIEERGFVVGAAYDIVKKKKSNPIMKGTYQMVLPSKLAQQGGQGDGDSENYIN
VSAKADSVFEQIRIIAKKISRTLFFPHIQVIIFSDKLLANPYVLQNTLDVYFRDHEMRRNIRLFVSKKNAESILKQSAKP
ENLPAQYIDMLAEHPPKNAQMIEAARIGEVQGKMIADRSFALPLLGLTKQGVQMEGAALIRGKDNKCVGTLSGEQTLGMN
YVIGKKIGGFFTVRKKNQLITYEIHKLRRKIQVSTENATKPKFDIHLSTEGILAELHFNEPKQVMNEKFLKKEISKEMKK
RIEKSIQLVQKKYKVDVLELGEVYKRHNYKEWKKISKNWDQGQNYFSNAEINVHVDPTIEHSGSALPKKVK

Sequences:

>Translated_391_residues
MVEMKHLLKIIMVIVLAGSISGCSELEEIEERGFVVGAAYDIVKKKKSNPIMKGTYQMVLPSKLAQQGGQGDGDSENYIN
VSAKADSVFEQIRIIAKKISRTLFFPHIQVIIFSDKLLANPYVLQNTLDVYFRDHEMRRNIRLFVSKKNAESILKQSAKP
ENLPAQYIDMLAEHPPKNAQMIEAARIGEVQGKMIADRSFALPLLGLTKQGVQMEGAALIRGKDNKCVGTLSGEQTLGMN
YVIGKKIGGFFTVRKKNQLITYEIHKLRRKIQVSTENATKPKFDIHLSTEGILAELHFNEPKQVMNEKFLKKEISKEMKK
RIEKSIQLVQKKYKVDVLELGEVYKRHNYKEWKKISKNWDQGQNYFSNAEINVHVDPTIEHSGSALPKKVK
>Mature_391_residues
MVEMKHLLKIIMVIVLAGSISGCSELEEIEERGFVVGAAYDIVKKKKSNPIMKGTYQMVLPSKLAQQGGQGDGDSENYIN
VSAKADSVFEQIRIIAKKISRTLFFPHIQVIIFSDKLLANPYVLQNTLDVYFRDHEMRRNIRLFVSKKNAESILKQSAKP
ENLPAQYIDMLAEHPPKNAQMIEAARIGEVQGKMIADRSFALPLLGLTKQGVQMEGAALIRGKDNKCVGTLSGEQTLGMN
YVIGKKIGGFFTVRKKNQLITYEIHKLRRKIQVSTENATKPKFDIHLSTEGILAELHFNEPKQVMNEKFLKKEISKEMKK
RIEKSIQLVQKKYKVDVLELGEVYKRHNYKEWKKISKNWDQGQNYFSNAEINVHVDPTIEHSGSALPKKVK

Specific function: May be involved in spore germination [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Lipid-anchor [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gerABKC lipoprotein family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008844 [H]

Pfam domain/function: PF05504 Spore_GerAC [H]

EC number: NA

Molecular weight: Translated: 44444; Mature: 44444

Theoretical pI: Translated: 10.19; Mature: 10.19

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVEMKHLLKIIMVIVLAGSISGCSELEEIEERGFVVGAAYDIVKKKKSNPIMKGTYQMVL
CCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCEEEEEHHHHHHHHCCCCCCCCHHHHHC
PSKLAQQGGQGDGDSENYINVSAKADSVFEQIRIIAKKISRTLFFPHIQVIIFSDKLLAN
CHHHHHCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHCC
PYVLQNTLDVYFRDHEMRRNIRLFVSKKNAESILKQSAKPENLPAQYIDMLAEHPPKNAQ
CCHHHHHHHHEECCHHHCCCEEEEEECCCHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCH
MIEAARIGEVQGKMIADRSFALPLLGLTKQGVQMEGAALIRGKDNKCVGTLSGEQTLGMN
HHHHHHHHHHCCCEEECCCCCCHHHCCCCCCCEECCEEEEECCCCCEEEECCCCCCCCCE
YVIGKKIGGFFTVRKKNQLITYEIHKLRRKIQVSTENATKPKFDIHLSTEGILAELHFNE
EEECCCCCCEEEEECCCCEEHHHHHHHHHHEEECCCCCCCCEEEEEECCCCEEEEECCCC
PKQVMNEKFLKKEISKEMKKRIEKSIQLVQKKYKVDVLELGEVYKRHNYKEWKKISKNWD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHCCHH
QGQNYFSNAEINVHVDPTIEHSGSALPKKVK
HCCCCCCCCEEEEEECCCCCCCCCCCCCCCC
>Mature Secondary Structure
MVEMKHLLKIIMVIVLAGSISGCSELEEIEERGFVVGAAYDIVKKKKSNPIMKGTYQMVL
CCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCEEEEEHHHHHHHHCCCCCCCCHHHHHC
PSKLAQQGGQGDGDSENYINVSAKADSVFEQIRIIAKKISRTLFFPHIQVIIFSDKLLAN
CHHHHHCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHCC
PYVLQNTLDVYFRDHEMRRNIRLFVSKKNAESILKQSAKPENLPAQYIDMLAEHPPKNAQ
CCHHHHHHHHEECCHHHCCCEEEEEECCCHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCH
MIEAARIGEVQGKMIADRSFALPLLGLTKQGVQMEGAALIRGKDNKCVGTLSGEQTLGMN
HHHHHHHHHHCCCEEECCCCCCHHHCCCCCCCEECCEEEEECCCCCEEEECCCCCCCCCE
YVIGKKIGGFFTVRKKNQLITYEIHKLRRKIQVSTENATKPKFDIHLSTEGILAELHFNE
EEECCCCCCEEEEECCCCEEHHHHHHHHHHEEECCCCCCCCEEEEEECCCCEEEEECCCC
PKQVMNEKFLKKEISKEMKKRIEKSIQLVQKKYKVDVLELGEVYKRHNYKEWKKISKNWD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHCCHH
QGQNYFSNAEINVHVDPTIEHSGSALPKKVK
HCCCCCCCCEEEEEECCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]