| Definition | Candidatus Protochlamydia amoebophila UWE25, complete genome. |
|---|---|
| Accession | NC_005861 |
| Length | 2,414,465 |
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The map label for this gene is 46447602
Identifier: 46447602
GI number: 46447602
Start: 2346419
End: 2347696
Strand: Direct
Name: 46447602
Synonym: pc1968
Alternate gene names: NA
Gene position: 2346419-2347696 (Clockwise)
Preceding gene: 46447601
Following gene: 46447603
Centisome position: 97.18
GC content: 35.52
Gene sequence:
>1278_bases ATGCTTATAAAACAAATTAGGGGAGGCTTAATGTTTGGTGGAAAATCAAATACCACGCTTGATACTAGACCTAGATATGA AAGTTCGGATATTAACTCACATTATCCAAATTCAGATGCTGAAGAACGAGAGCTTTGTATAAAAAATTTTTTTGCCATAC TGGATATGGGTCTGCAGACATTGCAGACATCGCAGACAAATCCGCCTGGTTTAAATAGTAAGAAAAAAATTGATTTGATA AGTCAAAAAGTCTCAACGAATGACGAAAGTTCTATTCCTAGCTCTGATGATGAAAGTTCTGGCTCCAGCTTTGATTCTGA GAAAGAACTTTATTTGATTAGCGATCGTATGAACTTTACCGATCGGCATAAATTTTCGCTAGAGACTAAAATAGTGAATG TCGAACTTATTTCTTCTACTGTTCAAATTTACTTGGAAGAAAACATACAGACATACAAAGATTTTAAACTTAAAAATTTT TCTAATCGTAAAATTTTAATTCTTATTCATGGATTCACAGTGAAATATGAGAATGCATCGAAAACACTACGACACCTTGC CGATAAAGTTGGGGATAGATATGACGCTGTTATTGGTTATTTATATCCTGCTTGCGCAAAATTTTACCAATATAATCAAG CAAAAGAGAATGGATTGTACGTAGCTGAAAAGCGGCTACCGGAGATATTGCATTCAATACAATCAGTAGCGGAACGTGTA GACATTGTAGCTCATAGCATGGGAACAATAGTTGCCATGCACGCATTAAATCAAAGCGCCAGTCCAAAAATTGATAAACT CTTCCTTCTTGGAGGAGTACTTGAAGAAAAAAGTATTTTTGAATGTGATGGTCAAGGATGTACTACTTTGAAGCGGGCAT TATCTAATGCTAAAAACATCTATGTGCTTTATTCCTGTAATGATAAAGTCCTGCCATGGCTGCATGTTATCGATTCTACG CAACCTCTTGGACGTCTCAGTAAAAATATACAGCAAAAACCTATCGCAAGAAATGTTTGCCTAATTAATACTTCTTCCGT TGTGAAAGGCCATAGTGCTTATTTTCAAAGTCAAGAGATCTTTAAATTTATATACGATGATGCACAAGGTAACAACAGCC TAGAGGGTACTTCTTTCTCTCTTACTTTCGATGGATTATCCTCTTCGGAGCATCCTATAGTCTGTCCTAAAGGGAAAAGT AATGCCATTTCGAGAGGATTTTCTAAAAAATTTGTTGCCTTTAAATTCCGAGGAAAAAAAGCACTTTCCAAAGATTAA
Upstream 100 bases:
>100_bases TTATTTAATATAATAATTTTATTAAATTTTAATTATACAATTCATTAAAATAGATTTAAAATATTAAGTTAATATTTAAA ATTTATTAGGTTTTATATAA
Downstream 100 bases:
>100_bases CACATAAAAGTAAGCTCTAAAATCAAGGCCAAATTCCAGCCAAATGGGTATTTTTGACCTTCATTTTAGAGCCAATTAAC TTATCCTATGCACAAAATGA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 425; Mature: 425
Protein sequence:
>425_residues MLIKQIRGGLMFGGKSNTTLDTRPRYESSDINSHYPNSDAEERELCIKNFFAILDMGLQTLQTSQTNPPGLNSKKKIDLI SQKVSTNDESSIPSSDDESSGSSFDSEKELYLISDRMNFTDRHKFSLETKIVNVELISSTVQIYLEENIQTYKDFKLKNF SNRKILILIHGFTVKYENASKTLRHLADKVGDRYDAVIGYLYPACAKFYQYNQAKENGLYVAEKRLPEILHSIQSVAERV DIVAHSMGTIVAMHALNQSASPKIDKLFLLGGVLEEKSIFECDGQGCTTLKRALSNAKNIYVLYSCNDKVLPWLHVIDST QPLGRLSKNIQQKPIARNVCLINTSSVVKGHSAYFQSQEIFKFIYDDAQGNNSLEGTSFSLTFDGLSSSEHPIVCPKGKS NAISRGFSKKFVAFKFRGKKALSKD
Sequences:
>Translated_425_residues MLIKQIRGGLMFGGKSNTTLDTRPRYESSDINSHYPNSDAEERELCIKNFFAILDMGLQTLQTSQTNPPGLNSKKKIDLI SQKVSTNDESSIPSSDDESSGSSFDSEKELYLISDRMNFTDRHKFSLETKIVNVELISSTVQIYLEENIQTYKDFKLKNF SNRKILILIHGFTVKYENASKTLRHLADKVGDRYDAVIGYLYPACAKFYQYNQAKENGLYVAEKRLPEILHSIQSVAERV DIVAHSMGTIVAMHALNQSASPKIDKLFLLGGVLEEKSIFECDGQGCTTLKRALSNAKNIYVLYSCNDKVLPWLHVIDST QPLGRLSKNIQQKPIARNVCLINTSSVVKGHSAYFQSQEIFKFIYDDAQGNNSLEGTSFSLTFDGLSSSEHPIVCPKGKS NAISRGFSKKFVAFKFRGKKALSKD >Mature_425_residues MLIKQIRGGLMFGGKSNTTLDTRPRYESSDINSHYPNSDAEERELCIKNFFAILDMGLQTLQTSQTNPPGLNSKKKIDLI SQKVSTNDESSIPSSDDESSGSSFDSEKELYLISDRMNFTDRHKFSLETKIVNVELISSTVQIYLEENIQTYKDFKLKNF SNRKILILIHGFTVKYENASKTLRHLADKVGDRYDAVIGYLYPACAKFYQYNQAKENGLYVAEKRLPEILHSIQSVAERV DIVAHSMGTIVAMHALNQSASPKIDKLFLLGGVLEEKSIFECDGQGCTTLKRALSNAKNIYVLYSCNDKVLPWLHVIDST QPLGRLSKNIQQKPIARNVCLINTSSVVKGHSAYFQSQEIFKFIYDDAQGNNSLEGTSFSLTFDGLSSSEHPIVCPKGKS NAISRGFSKKFVAFKFRGKKALSKD
Specific function: Unknown
COG id: COG4782
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 47674; Mature: 47674
Theoretical pI: Translated: 8.89; Mature: 8.89
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLIKQIRGGLMFGGKSNTTLDTRPRYESSDINSHYPNSDAEERELCIKNFFAILDMGLQT CCHHHHCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH LQTSQTNPPGLNSKKKIDLISQKVSTNDESSIPSSDDESSGSSFDSEKELYLISDRMNFT HHCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCC DRHKFSLETKIVNVELISSTVQIYLEENIQTYKDFKLKNFSNRKILILIHGFTVKYENAS CCCEEEEEEEEEEEEEHHHHHHHHHHHCCHHHHCCCCCCCCCCEEEEEEEEEEEEECCHH KTLRHLADKVGDRYDAVIGYLYPACAKFYQYNQAKENGLYVAEKRLPEILHSIQSVAERV HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHH DIVAHSMGTIVAMHALNQSASPKIDKLFLLGGVLEEKSIFECDGQGCTTLKRALSNAKNI HHHHHHHHHHHHHHHHCCCCCCCHHHEEEHHCHHCCCCEEEECCCCHHHHHHHHCCCCCE YVLYSCNDKVLPWLHVIDSTQPLGRLSKNIQQKPIARNVCLINTSSVVKGHSAYFQSQEI EEEEECCCCCCCHHHHHCCCCHHHHHHHHHHCCCCCCCEEEEECHHHHCCHHHHHHHHHH FKFIYDDAQGNNSLEGTSFSLTFDGLSSSEHPIVCPKGKSNAISRGFSKKFVAFKFRGKK HHHHHHCCCCCCCCCCCEEEEEECCCCCCCCCEECCCCCCHHHHCCCCCCEEEEEECCCC ALSKD CCCCC >Mature Secondary Structure MLIKQIRGGLMFGGKSNTTLDTRPRYESSDINSHYPNSDAEERELCIKNFFAILDMGLQT CCHHHHCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH LQTSQTNPPGLNSKKKIDLISQKVSTNDESSIPSSDDESSGSSFDSEKELYLISDRMNFT HHCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCC DRHKFSLETKIVNVELISSTVQIYLEENIQTYKDFKLKNFSNRKILILIHGFTVKYENAS CCCEEEEEEEEEEEEEHHHHHHHHHHHCCHHHHCCCCCCCCCCEEEEEEEEEEEEECCHH KTLRHLADKVGDRYDAVIGYLYPACAKFYQYNQAKENGLYVAEKRLPEILHSIQSVAERV HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHH DIVAHSMGTIVAMHALNQSASPKIDKLFLLGGVLEEKSIFECDGQGCTTLKRALSNAKNI HHHHHHHHHHHHHHHHCCCCCCCHHHEEEHHCHHCCCCEEEECCCCHHHHHHHHCCCCCE YVLYSCNDKVLPWLHVIDSTQPLGRLSKNIQQKPIARNVCLINTSSVVKGHSAYFQSQEI EEEEECCCCCCCHHHHHCCCCHHHHHHHHHHCCCCCCCEEEEECHHHHCCHHHHHHHHHH FKFIYDDAQGNNSLEGTSFSLTFDGLSSSEHPIVCPKGKSNAISRGFSKKFVAFKFRGKK HHHHHHCCCCCCCCCCCEEEEEECCCCCCCCCEECCCCCCHHHHCCCCCCEEEEEECCCC ALSKD CCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA